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berkeley_reactor_200306_planktonic_scaffold_226867

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Displaying items 31-60 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_226867_31
RBG_19FT_COMBO_Chloroflexi_49_13_curated, Chloroflexi, Bacteria

Not on your lists

39422..39889
DNA (468bp) protein (156aa)
MarR family transcriptional regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745E4A
MarR family transcriptional regulator
Tax=RBG_19FT_COMBO_Chloroflexi_49_13_curated
berkeley_reactor_200306_planktonic_scaffold_226867_trna_1
unknown

Not on your lists

40368..40442
DNA (75bp)
transferRNA Pro
berkeley_reactor_200306_planktonic_scaffold_226867_32
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

41313..42518
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR84_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57627.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_33
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42515..42889
DNA (375bp) protein (125aa)
GCN5-related N-acetyltransferase n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZG89_9PROT
N-acetyltransferase GCN5
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
berkeley_reactor_200306_planktonic_scaffold_226867_34
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42867..43088
DNA (222bp) protein (74aa)
GCN5-related N-acetyltransferase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017443FB
acetyltransferase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
berkeley_reactor_200306_planktonic_scaffold_226867_35
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

43288..45486
DNA (2199bp) protein (733aa)
Serine/threonine protein kinase {ECO:0000313|EMBL:EMB14495.1}; EC=2.7.-.- {ECO:0000313|EMBL:EMB14495.1};; TaxID=1263867 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea 6C.;"
Serine/threonine protein kinase n=1 Tax=Rhodopirellula europaea 6C RepID=M2ACB8_9PLAN
serine/threonine kinase
berkeley_reactor_200306_planktonic_scaffold_226867_36
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45594..46289)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y0F5_SORCE
Uncharacterized protein {ECO:0000313|EMBL:ETW99746.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_37
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

46502..47491
DNA (990bp) protein (330aa)
Aldo/keto reductase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZ38_OPITP
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ACB77110.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_226867_38
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(47603..48817)
DNA (1215bp) protein (405aa)
Nucleoside:H symporter n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE15_9BACT
Nucleoside:H symporter {ECO:0000313|EMBL:EEF61906.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
major facilitator superfamily protein
berkeley_reactor_200306_planktonic_scaffold_226867_39
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(48877..52218)
DNA (3342bp) protein (1114aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B4C615
putative glycosylhydrolase
Putative glycosylhydrolase {ECO:0000313|EMBL:AIE83958.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_226867_40
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(52663..53433)
DNA (771bp) protein (257aa)
Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKK1_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EDY82379.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_41
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(54077..56131)
DNA (2055bp) protein (685aa)
Endothelin-converting enzyme 1 {ECO:0000313|EMBL:EEF57903.1}; EC=3.4.24.71 {ECO:0000313|EMBL:EEF57903.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Endothelin-converting enzyme 1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQH8_9BACT
peptidase M13
berkeley_reactor_200306_planktonic_scaffold_226867_42
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(56173..57912)
DNA (1740bp) protein (580aa)
Arabinan endo-1,5-alpha-L-arabinosidase {ECO:0000313|EMBL:EEF60159.1}; EC=3.2.1.99 {ECO:0000313|EMBL:EEF60159.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Arabinan endo-1,5-alpha-L-arabinosidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIT2_9BACT
glycoside hydrolase family protein
berkeley_reactor_200306_planktonic_scaffold_226867_43
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(57966..58232)
DNA (267bp) protein (89aa)
30S ribosomal protein S20 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNE7_9BACT
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
30S ribosomal protein S20
berkeley_reactor_200306_planktonic_scaffold_226867_44
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

58407..61538
DNA (3132bp) protein (1044aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC97_9BACT
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EEF62565.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PAS domain-containing sensor histidine kinase response regulator
berkeley_reactor_200306_planktonic_scaffold_226867_45
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

61610..62305
DNA (696bp) protein (232aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00038204F6
berkeley_reactor_200306_planktonic_scaffold_226867_46
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62790..64052
DNA (1263bp) protein (421aa)
glycoside hydrolase 15-like protein; K07190 phosphorylase kinase alpha/beta subunit id=15193806 bin=GWC2_NOV_55_46 species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_NOV_55_46 organism_group=Proteobacteria
glycoside hydrolase 15-like protein
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
berkeley_reactor_200306_planktonic_scaffold_226867_47
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

64223..65656
DNA (1434bp) protein (478aa)
Phosphoglucomutase {ECO:0000313|EMBL:EEF61008.1}; EC=5.4.2.2 {ECO:0000313|EMBL:EEF61008.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phosphoglucomutase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGF7_9BACT
phosphoglucosamine mutase
berkeley_reactor_200306_planktonic_scaffold_226867_48
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

65751..68366
DNA (2616bp) protein (872aa)
Lyase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBN8_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC82215.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_226867_49
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68587..72300)
DNA (3714bp) protein (1238aa)
Putative sensor histidine kinase with a response regulator receiver domain n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XKA0_METNJ
sensor histidine kinase with a response regulator receiver domain
Methylophaga nitratireducenticrescens strain JAM1, complete genome {ECO:0000313|EMBL:AFI84819.1}; TaxID=754476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM; 25689 / JAM1).;"
berkeley_reactor_200306_planktonic_scaffold_226867_50
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72297..72698)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI000370FC01
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ACT48132.1}; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540).;"
berkeley_reactor_200306_planktonic_scaffold_226867_51
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72677..75682)
DNA (3006bp) protein (1002aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540).;"
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI000363C9B5
multi-sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_226867_52
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

75704..79165
DNA (3462bp) protein (1154aa)
Histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA53_9BACT
Histidine kinase {ECO:0000313|EMBL:EEF63394.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component regulator, sensor protein
berkeley_reactor_200306_planktonic_scaffold_226867_53
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

79207..79869
DNA (663bp) protein (221aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9V4_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EDY16768.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_226867_54
Chlorobium ferrooxidans, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

80256..84188
DNA (3933bp) protein (1311aa)
Polymorphic membrane protein, Chlamydia:Haemagluttinin:Filamentous haemagglutinin-like n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YSM3_9CHLB
Polymorphic membrane protein, Chlamydia:Haemagluttinin:Filamentous haemagglutinin-like {ECO:0000313|EMBL:EAT59373.1}; TaxID=377431 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium ferrooxidans DSM 13031.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_55
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

84205..85074
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJJ3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60054.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_56
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

85248..86102
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIT1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60158.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_57
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

86214..87464
DNA (1251bp) protein (417aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y9V4_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC84019.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_226867_58
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

87583..90192
DNA (2610bp) protein (870aa)
E1-E2 ATPase subfamily, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZF91_9BACT
hypothetical protein
Tax=CG_Deferri_01
berkeley_reactor_200306_planktonic_scaffold_226867_59
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

90189..90365
DNA (177bp) protein (59aa)
Cytochrome oxidase maturation protein, Cbb3-type n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZF92_9BACT
Cytochrome oxidase maturation protein, Cbb3-type {ECO:0000313|EMBL:EAY31194.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
cbb3-type cytochrome c oxidase maturation protein CcoS
Displaying items 31-60 of 109 in total

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