ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_30796_106

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 164724..169334

Top 3 Functional Annotations

Value Algorithm Source
glutamate synthase n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B5D3C6 similarity UNIREF
DB: UNIREF100
  • Identity: 71.6
  • Coverage: 1519.0
  • Bit_score: 2229
  • Evalue 0.0
glutamate synthase family protein similarity KEGG
DB: KEGG
  • Identity: 70.1
  • Coverage: 1524.0
  • Bit_score: 2187
  • Evalue 0.0
Tax=RIFCSPHIGHO2_02_FULL_OP3X_51_18_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 70.9
  • Coverage: 1522.0
  • Bit_score: 2221
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_OP3X_51_18 → OP3X → Bacteria

Sequences

DNA sequence
Length: 4611
ATGCCGACAGCCAATAAGACCAGGGTGACGCCGCCGGGCGCACCACCAAAACAAGGCCTTTATGACCCTCAGTTCGAGCACGATGCGTGCGGACTGGGTTTCGTCGTGAACATGAAGGGCAAGAAATCCCATCAGATGGTGTCGGATGCCTTGACGATTCTTGTTCGCCTCGATCATCGCGGCGCGTGCGGCAGTGAACCCAACACGGGCGATGGCGCCGGCATTTTGATCCAGATTCCGCACGACTTTTTCGTGGCCGAAGCGGAACGGCTCGGCTTCAAGCTGCCCGAAGTGGGATACTACGGCGTCGGTCAATTGTTCCTGCCCCAGGTCCCGGAGCAGCGGGCCGCGGTCAAAGCCGAACTGGCCAAGCTGATCGCCGCCGAAGGCCAGACCGTGCTCGGCTGGCGCGAGGTGCCGACCGATAATTCGTCGCTCGGCAAAACCGCCATTGCCGCCGAGCCGTTCAAGGAACAGGTGTTCGTGGGCCGCAGCTCGGATTTGAAGGATGAACCGGCGTTCGAGCGCAAGCTGTGCGTCATCCGCAAACAGGCGGAGCAGAAGATTCATTTTGGCAAATCCGTTCCCGGCGGCGACTGGCTTTACATCGCCACGCTCTCGGCGCGCACGCTGGTTTACAAGGGCATGTTGATGTCCGAGCAGGTGGAGAAATATTATCCCGACCTGCGCAATCCCGCCGTCACCACGGCGCTCGCGCTGGTGCATTCGCGGTTCTCGACGAACACATTCCCGAGCTGGGACCGCGCGCATCCGAACCGCTACATCGCGCACAACGGCGAAATCAACACGCTGCGCGGGAACGTCAACTGGATGCACGCGCGCCAGGCGCTGTTCACCAGCCAGATCTTCGGTGACGAAATCAAAAAAATGATTCCCGTCATCAATACGAACGGCAGTGACTCGGCGCAGTTCGACAACTGCGTGGAACTGCTCACGCTCGCGGGCCGCGAACTGCCGCACGCGATGATGATGATGATTCCCGAGCCGTGGGAAAATCACGAGAGCATGGACCCGGAACGCCGGGCGTTTTATGAATTCCACTCCTGCCTGATGGAGCCGTGGGACGGCCCCGCCTCGATGGCGTTCACGGACGGAAAATTCATCGGCGCGTGTCTCGACCGCAATGGGCTGCGTCCGTCGCGTTATTATGTGACGCACGATGACGTGGTCATCATGGCGTCGGAAGCCGGCGTGCTGCCGGTCGAGCCGCAGCGCGTCAAAATCAAGGGCCGGTTGCAGCCCGGTAAAATGTTTTTGGTGGACCTCGAACAAGGCCGCATCATCGCCGACGAGGAGCTCAAAAAGAAATACGCCTCGGCCCATCCCTACCAGCAATGGCTGGATGAAAATCATCTGCTGCTGGAAAACCTGCCCGAGCCGCCGCACGTGCATGAGCCGGATCACGATTCCGTGCTGCAACGGCAGCAGGCGTTCGGCTACACGTTTGAAGACCTGCGCTTCATCGTCGGCCCGATGGCGCAAACCGGCGTTCAGCCGCTCGGCTCGATGGGCACGGACACGCCGCTGGCCGTGCTGTCGAACAAGTCGCAGTTGCTTTACAACTATTTCAAGCAGTTGTTCGCGCAGGTGACCAATCCGCCGATTGACCCGATCCGTGAGGAAATCATCACCTCGACAGAAATCATGGTCGGCGGCGAAGGCAATCTGCTCGAACCGACGCCCGAAAGCAGCCGTTTGATCAAGATGCATTATCCGATCCTCACCAACGAGGAATTGGAAAAGTTGCGTCATGTGCATCGCCCCGGCTTCAAATCCATCACGTTGCCGATTTTGTTCAAGGCGGCGGACGGTCCGAACGGTCTGGCCGGCGCGCTGGAAACCATTTTTGCCGCCGCCGACAAGGCCATCAACGACGGCGCCAATATCATTGTGCTGTCCGACCGCGGCGTCAGCGCCACGCTCGCGCCGGTTCCCGCGCTGCTGGCAGTGGCGGGTTTGCATCATCATCTGATTCGCCAGGGCACGCGGACGAAGATCGGGTTGATCCTCGAATCCGGTGAACCACGCGAAGTGCATCATTTTGCCGTGCTGATCGGCTACGGCTGCACCGCCATCAATCCGTATCTCGCATTTGAGACGATTGCGGATTTGATGAACGAAAAACTGCTGCCGGAAACGAACCACAAGGAAGCGGTCAAGAAATACATCAAGGCCGCCGTGAAAGGCGTCGTCAAGACGATGGCCAAGATGGGCATCTCGACCATCCAGAGCTATCACGGCGCGCAAATTTTTGAAGCCATCGGCCTCAACAGCGAGGTCGTGAACAAATACTTCACCTGGACGCCTTCGCGGATTCAAGGGGTCGGCCTGGAAGTCATCGCCGAAGAGGCGTTGTCCCGCCATCGCCGCGCGTTCCCGCCGGTGCCGGTCAACAGCGAACTCGACGCCGGCGGCCAGTATCAATGGCGCGATAACGGCGAATTCCATCTGTTCAACCCGCAGACGATTCACAAGCTGCAAAACGCCTGCCGCCTGAACAGCGAAAAAATCTATCGCGAATACGCCGAGTTGATCAACAACCAGGCGACGAACCTTTGCACCTTGCGCGGGTTGCTCGACTTCCAGTTTTCGGAAAATCCGATTCCGCTGGAGGAAGTCGAATCGGTGGACAGCATCGTCAAGCGGTTCAAGACCGGCGCGATGAGCTACGGTTCCATTTCCCAGGAAGCGCACGAAACGCTGGCCATCGCCATGAACCGTCTCGGCGGTCGTTCCAACACCGGCGAAGGCGGCGAAGATCCGGAACGTTACGTCTGGACCAACGAGAAAGGCGATTCCAAGAATTCCGCGATCAAGCAGGTCGCTTCCGGGCGCTTTGGCGTGACGAGCCATTACCTCGTCAACGCGAAGGAACTGCAAATCAAGATGGCCCAGGGCGCGAAGCCCGGCGAAGGCGGCGAACTGCCCGGCAAGAAAGTTTATCCGTGGGTCGCCAAGGTGCGCGGCACCACGGCGGGCGTCGGCCTCATTTCGCCGCCGCCGCATCATGACATTTACTCCATCGAAGATTTGGCGGAGTTGATTCATGACCTGAAGAACGCCAATCGCGAGGCGCGCGTGAGCGTGAAACTCGTCGCCGAAGTCGGCGTTGGCACCATCGCCGCCGGCGTGGCGAAGGCGCACGCGGACGTCGTGCTGATTTCCGGTCACGACGGCGGCACAGGCGCGTCGCCGCTCTCGTCCATCAAACACGCGGGCGGTCCGTGGGAGCTCGGCCTGGCCGAAACCCACCAGACGCTCGTGCTGAACAATCTGCGCAGCCGCATTTACGTCGAAACCGACGGCCAGTTGAAGACCGGTCGCGACGTCGCCGTGGCGGCTTTGCTCGGCGCGGAAGAATTTGGCTTCGCCACCGCTCCGCTGGTCGTCATGGGCTGCATCATGATGCGCGTCTGCCACCTGAACACCTGCCCGGTCGGCGTCGCCACGCAGGACCCGCGCCTGCGCGCGCGGTTCACCGGCGATCCCGATCACGTCGTGAATTTCATGCGCTTCATCGCGCAGGAACTGCGCGAGATCATGGCCAAGCTCGGCTTCCGCAAGCTGGAGGACATGATTGGTCGCACGGACAAGTTGATTCCGTGGAAGGCCATTGAACATTGGAAGGCGCGCGGCGTGGACCTGACGCCGATTCTGTATCAGCCGAATGTTCCCGCCGATGTCGGCCGGTTCCGGCAGCAGGATCAGGATCATGGCTTGGAGAAATCGCTCGACGTGACCAAGCTGCTCGACATCTGCAAACCCGCCATCGAACGCGGCGAAGCGGTGAAGGCGGAACTGCCCATCATCAACGTGAACCGCGTGGTCGGCACCATTGTCGGCAGTGAGATCACGAAGAAACACGGTCCGAACGGCCTGCCCGAGGACACCGTGCAGCTCAAGTTCAACGGCAGCGCCGGTCAGAGCTTTGGCGCGTTCGTGCCCAAGGGCATGACGCTGGAACTGGAAGGCGATGCGAATGATTATTTCGGCAAGGGGTTGAGCGGCGGCAAGCTCATTGTTTATCCGCCGCAAGGTTCCACCTTTGTGCCCGAGGAAAACATCCTCATCGGCAACGTCGCGCTTTACGGCGCCACCGCCGGTGAAATCTTCGTGCGCGGCATGGCGGGCGAACGTTTCGCGGTCCGCAACTCCGGGGTCAACGCCGTCGTCGAAGCCATTGGCGATCACGGTTGCGAATACATGACCGGCGGCCGCGTGGTGGTGCTCGGGCCGACCGGACGCAACTTTGCCGCCGGCATGAGCGGCGGGGTGGCCTACGTTTTGGACGAGGCCGGCGATTTCAAAAATCGCTGCAACCCGGAACTGGTTGCCCTGGAAAAATTGACCGAGGCCGACGAGATCGAAGCCGTCTGGAAACTCGTTCAACGTCACCAGACCTACACCCACAGCGAACGCGCCGCGAAAATTCTCGCGGACTGGAAGAGCTACGTTCCGAAATTCGTCAAGGTGTTGCCGCAGGATTACGCACGCGTGCTGGCCTCGCTCAAGCGCGTGCAATCGCAGGGCCTGAGCGGCGACGACGCGATCATGGCGGCGTTTGAAGAAAACGTGAAGAGCGGCCATTGA
PROTEIN sequence
Length: 1537
MPTANKTRVTPPGAPPKQGLYDPQFEHDACGLGFVVNMKGKKSHQMVSDALTILVRLDHRGACGSEPNTGDGAGILIQIPHDFFVAEAERLGFKLPEVGYYGVGQLFLPQVPEQRAAVKAELAKLIAAEGQTVLGWREVPTDNSSLGKTAIAAEPFKEQVFVGRSSDLKDEPAFERKLCVIRKQAEQKIHFGKSVPGGDWLYIATLSARTLVYKGMLMSEQVEKYYPDLRNPAVTTALALVHSRFSTNTFPSWDRAHPNRYIAHNGEINTLRGNVNWMHARQALFTSQIFGDEIKKMIPVINTNGSDSAQFDNCVELLTLAGRELPHAMMMMIPEPWENHESMDPERRAFYEFHSCLMEPWDGPASMAFTDGKFIGACLDRNGLRPSRYYVTHDDVVIMASEAGVLPVEPQRVKIKGRLQPGKMFLVDLEQGRIIADEELKKKYASAHPYQQWLDENHLLLENLPEPPHVHEPDHDSVLQRQQAFGYTFEDLRFIVGPMAQTGVQPLGSMGTDTPLAVLSNKSQLLYNYFKQLFAQVTNPPIDPIREEIITSTEIMVGGEGNLLEPTPESSRLIKMHYPILTNEELEKLRHVHRPGFKSITLPILFKAADGPNGLAGALETIFAAADKAINDGANIIVLSDRGVSATLAPVPALLAVAGLHHHLIRQGTRTKIGLILESGEPREVHHFAVLIGYGCTAINPYLAFETIADLMNEKLLPETNHKEAVKKYIKAAVKGVVKTMAKMGISTIQSYHGAQIFEAIGLNSEVVNKYFTWTPSRIQGVGLEVIAEEALSRHRRAFPPVPVNSELDAGGQYQWRDNGEFHLFNPQTIHKLQNACRLNSEKIYREYAELINNQATNLCTLRGLLDFQFSENPIPLEEVESVDSIVKRFKTGAMSYGSISQEAHETLAIAMNRLGGRSNTGEGGEDPERYVWTNEKGDSKNSAIKQVASGRFGVTSHYLVNAKELQIKMAQGAKPGEGGELPGKKVYPWVAKVRGTTAGVGLISPPPHHDIYSIEDLAELIHDLKNANREARVSVKLVAEVGVGTIAAGVAKAHADVVLISGHDGGTGASPLSSIKHAGGPWELGLAETHQTLVLNNLRSRIYVETDGQLKTGRDVAVAALLGAEEFGFATAPLVVMGCIMMRVCHLNTCPVGVATQDPRLRARFTGDPDHVVNFMRFIAQELREIMAKLGFRKLEDMIGRTDKLIPWKAIEHWKARGVDLTPILYQPNVPADVGRFRQQDQDHGLEKSLDVTKLLDICKPAIERGEAVKAELPIINVNRVVGTIVGSEITKKHGPNGLPEDTVQLKFNGSAGQSFGAFVPKGMTLELEGDANDYFGKGLSGGKLIVYPPQGSTFVPEENILIGNVALYGATAGEIFVRGMAGERFAVRNSGVNAVVEAIGDHGCEYMTGGRVVVLGPTGRNFAAGMSGGVAYVLDEAGDFKNRCNPELVALEKLTEADEIEAVWKLVQRHQTYTHSERAAKILADWKSYVPKFVKVLPQDYARVLASLKRVQSQGLSGDDAIMAAFEENVKSGH*