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berkeley_reactor_200306_planktonic_scaffold_30796_116

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(175863..176810)

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease HIII {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088219}; Short=RNase HIII {ECO:0000256|HAMAP-Rule:MF_00053};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088223};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.6
  • Coverage: 313.0
  • Bit_score: 454
  • Evalue 8.30e-125
Ribonuclease HIII n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFP6_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 71.6
  • Coverage: 313.0
  • Bit_score: 454
  • Evalue 5.90e-125
rnhC; ribonuclease HIII similarity KEGG
DB: KEGG
  • Identity: 47.7
  • Coverage: 298.0
  • Bit_score: 234
  • Evalue 3.60e-59

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 948
ATGCACACGGACAAGCTGACCGACGCTCAGGCGTCGGCGTTGCAGGCTGCGCTGGTGGCGCGGAACTGGCAGCCGCGCACGGTGCCTTACGCGCGGTTCGCCTTTGAGTCGGACAAATGCAACGTGGTTTTTTACGAGAGCGGCAAGTTGGTGGTGCAGGGCAAGGGCACGCAGGAATTCGTCGAGTTCCTGCTGGAGCCGGAGATTCTCAAGCAGGTGAAGCTGGGCTACGAGACGGTGTTGAATCCCGATTTGCTGCTGCCCCGGTTTGGCGTGGACGAAAGCGGCAAGGGCGATTTCTTCGGGCCGCTGTGCATCGCGGGCGTTTATGTGAACGAGGCCGTTATCGCCGCGTGGAAAGACCAGGGCGTGCGCGATTCCAAAAACATTTCCAGCGACAAAAAAATCCATGAACTTGCCGACGTCATTCGCAAAACGCCCGGTTGCGTGGTGGACACGGTGACGATTGGCAATGAAGCCTACAACCGGCTTTATGAGAAAATGAAATCGGTCAACGCCATGCTCGCCTGGGGCCACGCGCGCGTGATCGAGAATCTCATGGGCAAGCGTTACCAGATGAATCCGCTGCCGGTGCGGGCCATCAGCGACCAGTTCGCCGCGAGCAAAAGCGTGATTGAAAAGGCGTTGATGAAGGACGGTCGCCAGATCGAACTGGTGCAGCGGCACAAGGCGGAAGAAGACATCGCGGTGGCGGCGGCTTCCATTCTCGCGCGGGATGAATTTGTGAAGGGAATGGCGAAGTTGTCGCATCAGTTTGGCGTGGAATTTCCGAAAGGCGCGGGGGCCAACGTGGACAAGCTGGCCAAGGCATTTGTGGAATCACGCGGCGCGGCGGAATTGGTGAAAGTTTCCAAAACGCATTTCCGCACGGCGCTGCGGGCGCAAGGTTTGCCGGAACCGCCGAAGATGCAATGGCGGCAGCGGTAA
PROTEIN sequence
Length: 316
MHTDKLTDAQASALQAALVARNWQPRTVPYARFAFESDKCNVVFYESGKLVVQGKGTQEFVEFLLEPEILKQVKLGYETVLNPDLLLPRFGVDESGKGDFFGPLCIAGVYVNEAVIAAWKDQGVRDSKNISSDKKIHELADVIRKTPGCVVDTVTIGNEAYNRLYEKMKSVNAMLAWGHARVIENLMGKRYQMNPLPVRAISDQFAASKSVIEKALMKDGRQIELVQRHKAEEDIAVAAASILARDEFVKGMAKLSHQFGVEFPKGAGANVDKLAKAFVESRGAAELVKVSKTHFRTALRAQGLPEPPKMQWRQR*