ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_64763_20

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(35555..35908)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036BC618 similarity UNIREF
DB: UNIREF100
  • Identity: 60.8
  • Coverage: 74.0
  • Bit_score: 98
  • Evalue 3.10e-18
Endonuclease DDE {ECO:0000313|EMBL:EXF93761.1}; TaxID=1042209 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens HK44.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.5
  • Coverage: 81.0
  • Bit_score: 94
  • Evalue 8.10e-17
ISPsy25, transposase similarity KEGG
DB: KEGG
  • Identity: 81.8
  • Coverage: 44.0
  • Bit_score: 79
  • Evalue 4.20e-13

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudomonas fluorescens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 354
GTGGTCGGTTTGTATTTGAACCCGCCGGACAAGGCGTTGGTGCTTTGTTGTGATGAAAAGAGCCAGGGCCAGGCGTTGGAACGCACGCAACCGGGATTGCCGCTGGGTGTGGGCCATACTCCGACCAGCAGTTCCTGGCTCAATCTGGTGGAGAGATTTTTCAGGGACCTGACGCAAGCAGTGGTGCGGGAGGGCAGTTTTGGCAGCGTGCGGGAATTGATGCAAGCCATTAAAGCCTATCTGACCGAACGCAATCTGGCGCCCAAGCGATATGTTTGGAAAAAGAAGGGCGAAGAGATTTTGGCCAAGATTACCAAGGCGCGAGCAATGCTGACCGCCACCCAATCGTTATGA
PROTEIN sequence
Length: 118
VVGLYLNPPDKALVLCCDEKSQGQALERTQPGLPLGVGHTPTSSSWLNLVERFFRDLTQAVVREGSFGSVRELMQAIKAYLTERNLAPKRYVWKKKGEEILAKITKARAMLTATQSL*