ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_64763

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_64763_1
unknown

Not on your lists

2..226
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_64763_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

359..3391
DNA (3033bp) protein (1011aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9V3_9BACT
two component regulator, sensor protein
berkeley_reactor_200306_planktonic_scaffold_64763_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

3388..4059
DNA (672bp) protein (224aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9V4_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EDY16768.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_64763_4
unknown

Not on your lists

4304..4843
DNA (540bp) protein (180aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_64763_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5345..6214
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF63_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61561.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_64763_6
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

6404..8860
DNA (2457bp) protein (819aa)
Cellobiose phosphorylase id=3210350 bin=GWF2_Lentisphaerae_49_21 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_64763_7
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

8865..10040
DNA (1176bp) protein (392aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IRP6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94478.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_64763_8
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

10166..11782
DNA (1617bp) protein (539aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IZQ6_9BACT
xanthan lyase
Xanthan lyase {ECO:0000313|EMBL:AHF89547.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_64763_9
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

11791..13059
DNA (1269bp) protein (423aa)
Major facilitator superfamily MFS_1 n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IRQ0_9BACT
MFS transporter
MFS transporter {ECO:0000313|EMBL:AHF91734.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_64763_10
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13056..14252)
DNA (1197bp) protein (399aa)
Xylose operon regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A1D2_9PLAN
Xylose operon regulatory protein {ECO:0000313|EMBL:EAQ77381.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_64763_11
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

14680..17937
DNA (3258bp) protein (1086aa)
Glycoside hydrolase family 5 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PGN3_CHIPD
glycoside hydrolase
Tax=BJP_IG2102_BRC1_58_13
berkeley_reactor_200306_planktonic_scaffold_64763_12
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

18000..20906
DNA (2907bp) protein (969aa)
Beta-galactosidase (EC:3.2.1.23) n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWR0_9BACT
beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase (EC:3.2.1.23) {ECO:0000313|EMBL:CCW36355.1}; EC=3.2.1.23 {ECO:0000313|EMBL:CCW36355.1};; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
berkeley_reactor_200306_planktonic_scaffold_64763_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

21148..23829
DNA (2682bp) protein (894aa)
Cell surface receptor IPT/TIG domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAL4_9BACT
Cell surface receptor IPT/TIG domain protein {ECO:0000313|EMBL:EEF63049.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
outer membrane autotransporter barrel domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_64763_14
unknown

Not on your lists

24029..25831
DNA (1803bp) protein (601aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_64763_15
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

25839..27905
DNA (2067bp) protein (689aa)
Alpha-glucosidase, putative n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZN46_OPITP
alpha-glucosidase
Alpha-glucosidase, putative {ECO:0000313|EMBL:ACB76497.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_64763_16
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27985..30672
DNA (2688bp) protein (896aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036C24A5
Glycoside hydrolase {ECO:0000313|EMBL:KGO86568.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
glycoside hydrolase family protein
berkeley_reactor_200306_planktonic_scaffold_64763_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

30716..32437
DNA (1722bp) protein (574aa)
Xanthan lyase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG87_9BACT
Xanthan lyase {ECO:0000313|EMBL:EEF61249.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
xanthan lyase
berkeley_reactor_200306_planktonic_scaffold_64763_18
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

32455..34689
DNA (2235bp) protein (745aa)
beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase {ECO:0000256|RuleBase:RU000675}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU000675};; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Beta-galactosidase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRX0_OPITP
berkeley_reactor_200306_planktonic_scaffold_64763_19
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

34751..35536
DNA (786bp) protein (262aa)
glycosyl hydrolase (EC:3.2.1.-)
Glycosyl hydrolase family protein id=2851546 bin=GWF2_Lentisphaerae_49_21 species=Zunongwangia profunda genus=Zunongwangia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_64763_20
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35555..35908)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036BC618
Endonuclease DDE {ECO:0000313|EMBL:EXF93761.1}; TaxID=1042209 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens HK44.;"
ISPsy25, transposase
berkeley_reactor_200306_planktonic_scaffold_64763_21

Not on your lists

comp(36244..37497)
DNA (1254bp) protein (418aa)
Integrase domain protein SAM domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9W3_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48707.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_64763_trna_2
unknown

Not on your lists

comp(37611..37682)
DNA (72bp)
transferRNA Glu
berkeley_reactor_200306_planktonic_scaffold_64763_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(37745..38368)
DNA (624bp) protein (208aa)
HNH endonuclease n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRB4_9BACT
HNH endonuclease {ECO:0000313|EMBL:EEF57601.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
HNH endonuclease
berkeley_reactor_200306_planktonic_scaffold_64763_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

38485..40185
DNA (1701bp) protein (567aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRB7_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EEF57604.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nrfG; TPR repeats containing protein
berkeley_reactor_200306_planktonic_scaffold_64763_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

40295..40717
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRB8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57605.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative secondary thiamine-phosphate synthase
berkeley_reactor_200306_planktonic_scaffold_64763_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

40822..43146
DNA (2325bp) protein (775aa)
FG-GAP repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRB9_9BACT
FG-GAP repeat protein {ECO:0000313|EMBL:EEF57606.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
FG-GAP repeat-containing protein
berkeley_reactor_200306_planktonic_scaffold_64763_26
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(43394..44536)
DNA (1143bp) protein (381aa)
6-phosphofructokinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B8E9_9PROT
phosphofructokinase
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_64763_27
unknown

Not on your lists

comp(45228..45902)
DNA (675bp) protein (225aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_64763_28
unknown

Not on your lists

comp(45899..46558)
DNA (660bp) protein (220aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_64763_29
unknown

Not on your lists

comp(46689..47084)
DNA (396bp) protein (132aa)

This feature has no annotations

Displaying items 1-30 of 56 in total

View Taxonomy