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berkeley_reactor_200306_planktonic_scaffold_64763

Search features with annotation key words

Displaying items 31-56 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_64763_30
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

47948..48736
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C3B5_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ78093.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_64763_31
unknown

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comp(49271..49807)
DNA (537bp) protein (179aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_64763_32
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

50178..51065
DNA (888bp) protein (296aa)
AraC family transcriptional regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744BA4
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDY19508.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_64763_33
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

51336..56150
DNA (4815bp) protein (1605aa)
Dockerin type 1 n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2CCC0
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_64763_34
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(56242..57603)
DNA (1362bp) protein (454aa)
Xaa-Pro aminopeptidase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZPS3_9PLAN
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:EAQ81753.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
peptidase M24
berkeley_reactor_200306_planktonic_scaffold_64763_35
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(57842..58774)
DNA (933bp) protein (311aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YIM5_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ26591.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_64763_36
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

59332..62250
DNA (2919bp) protein (973aa)
Putative uncharacterized protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F597_ACIC5
Uncharacterized protein {ECO:0000313|EMBL:CDM64750.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_64763_37
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

62540..65104
DNA (2565bp) protein (855aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B6992E
dipeptidyl aminopeptidase/acylaminoacyl peptidase
Tax=RBG_16_Planctomycetes_55_9_curated
berkeley_reactor_200306_planktonic_scaffold_64763_38
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

65115..66902
DNA (1788bp) protein (596aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DFQ2_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27486.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_64763_39
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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66947..68416
DNA (1470bp) protein (490aa)
Amino acid/peptide transporter n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JAI0_ANAD2
amino acid/peptide transporter
Amino acid/peptide transporter {ECO:0000313|EMBL:ACL67479.1}; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258).;"
berkeley_reactor_200306_planktonic_scaffold_64763_40
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

68560..71043
DNA (2484bp) protein (828aa)
Uncharacterized protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NQX2_GRAMM
Uncharacterized protein {ECO:0000313|EMBL:CDM64090.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_64763_41
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

71582..75295
DNA (3714bp) protein (1238aa)
CHU large protein id=4083763 bin=GWF2_Bacteroidetes_40_13 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
cytochrome C family protein
Tax=GWE2_Bacteroidetes_40_63_curated
berkeley_reactor_200306_planktonic_scaffold_64763_42
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

75382..76200
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003820FF0
Uncharacterized protein {ECO:0000313|EMBL:EEF60158.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain
berkeley_reactor_200306_planktonic_scaffold_64763_43
GWC2_ACD39_50_8_curated, ACD39, Bacteria

Not on your lists

comp(76374..77372)
DNA (999bp) protein (333aa)
Cation diffusion facilitator family transporter id=4382015 bin=GWC2_ACD39_50_8 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_ACD39_50_8 organism_group=ACD39
czcD; cobalt-zinc-cadmium resistance protein czcD
Tax=GWC2_ACD39_50_8_curated
berkeley_reactor_200306_planktonic_scaffold_64763_44
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(77895..79019)
DNA (1125bp) protein (375aa)
High-affinity nickel-transporter n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC85_9BACT
High-affinity nickel-transporter {ECO:0000313|EMBL:EDY15962.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
high-affinity nickel-transporter
berkeley_reactor_200306_planktonic_scaffold_64763_45
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(79029..79307)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Bdellovibrio exovorus JSS RepID=M4V595_9DELT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
berkeley_reactor_200306_planktonic_scaffold_64763_46
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(79490..80227)
DNA (738bp) protein (246aa)
Putative membrane protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F254_ACIC5
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:ACO33583.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
berkeley_reactor_200306_planktonic_scaffold_64763_47
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(80319..83447)
DNA (3129bp) protein (1043aa)
heavy metal efflux pump; K15726 cobalt-zinc-cadmium resistance protein CzcA id=24433491 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
CzcA family heavy metal efflux protein
Tax=RBG_16_RIF_WS3X_71_46_curated
berkeley_reactor_200306_planktonic_scaffold_64763_48
GWF2_Elusimicrobia_62_30_curated, Elusimicrobia, Bacteria

Not on your lists

comp(83449..84633)
DNA (1185bp) protein (395aa)
RND family efflux transporter MFP subunit; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB id=16796946 bin=RBG_16_Aminicenantes_66_30 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
RND family efflux transporter MFP subunit
Tax=GWF2_Elusimicrobia_62_30_curated
berkeley_reactor_200306_planktonic_scaffold_64763_49
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84642..85937)
DNA (1296bp) protein (432aa)
Putative Cation efflux system protein CzcC id=1778315 bin=GWB2_Proteobacteria_55_19 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
outer membrane efflux protein
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
berkeley_reactor_200306_planktonic_scaffold_64763_50
unknown

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comp(86033..86470)
DNA (438bp) protein (146aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_64763_51

Not on your lists

comp(86524..86721)
DNA (198bp) protein (66aa)
Iron permease FTR1 n=1 Tax=mine drainage metagenome RepID=E6PXX2_9ZZZZ
Iron permease FTR1 {ECO:0000313|EMBL:CBH99781.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
FTR1 family protein
berkeley_reactor_200306_planktonic_scaffold_64763_52

Not on your lists

comp(86725..87084)
DNA (360bp) protein (120aa)
Iron permease FTR1 n=1 Tax=mine drainage metagenome RepID=E6PXX2_9ZZZZ
Iron permease FTR1 {ECO:0000313|EMBL:CBH99781.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
FTR1 family protein
berkeley_reactor_200306_planktonic_scaffold_64763_53
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87129..88769)
DNA (1641bp) protein (547aa)
Tetratricopeptide repeat protein,tetratricopeptide repeat protein,sulfotransferase family protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CEH4_9GAMM
sulfotransferase
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
berkeley_reactor_200306_planktonic_scaffold_64763_trna_1
unknown

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89044..89116
DNA (73bp)
transferRNA Lys
berkeley_reactor_200306_planktonic_scaffold_64763_54
unknown

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89274..89393
DNA (120bp) protein (40aa)

This feature has no annotations

Displaying items 31-56 of 56 in total

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