ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_158606_123

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(147339..147998)

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEI2_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 60.1
  • Coverage: 208.0
  • Bit_score: 240
  • Evalue 1.20e-60
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF61696.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.1
  • Coverage: 208.0
  • Bit_score: 240
  • Evalue 1.70e-60
LuxR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 55.6
  • Coverage: 205.0
  • Bit_score: 223
  • Evalue 5.70e-56

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 660
ATGAAATCCGTGAGCATCACTGTTTCGATTGTGGAGGATGACGCGCCCTTGCGCGGGATTTTGCGGGACTGGATCTGTGGCGCGGAGGGTTTCCAATGCGGCGGCGCGCATGATAGCGCGGAGGCCGCGCTGGAAGCGCTGCCCCGGGAAAATCCCTCCGTGGTGCTGATGGATATCAACATGCCCGGCATGAACGGCATCGAATGCGTCCGCCGCCTCAAGCCGCAAATGATGAACACACAGTTCATGATGCTGACGGTGTATGAGGATTCCGACCACATTTTCAAGGCGCTGTCGTCGGGCGCGAGTGGTTATCTGCTGAAACGCACGCCGCGCGCCGAACTGCTGGCCGCCATCAAGGACGTTCACGCCGGCGGCTCGCCGATGAGCAGCAATATTGCGCGCAAAATTGTCCAGTCGTTCCAGCGGTTTGCTCCGGTTTCGTCCTCCGAGCCGGAGAGTCTTTCGCCGCGCGAACGGGAAGTTTTGGAACTGCTCGCGCGCGGCTATCTCTACAAGGAAATTGCAGACAACCTGCAAATCAGCGTGCCGACGGTCAATACGCACATCCGGCGCATCTACGAAAAACTGCACGTCCGCTCGCGCTCCCAGGCGGTCGCCAAGTTCACGCATATTCCCAACGCCGCCACTGCGGAATGA
PROTEIN sequence
Length: 220
MKSVSITVSIVEDDAPLRGILRDWICGAEGFQCGGAHDSAEAALEALPRENPSVVLMDINMPGMNGIECVRRLKPQMMNTQFMMLTVYEDSDHIFKALSSGASGYLLKRTPRAELLAAIKDVHAGGSPMSSNIARKIVQSFQRFAPVSSSEPESLSPREREVLELLARGYLYKEIADNLQISVPTVNTHIRRIYEKLHVRSRSQAVAKFTHIPNAATAE*