ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_204825_47

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(54392..55138)

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMN6_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 75.6
  • Coverage: 246.0
  • Bit_score: 377
  • Evalue 7.30e-102
ABC transporter related-protein {ECO:0000313|EMBL:EEF58935.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.6
  • Coverage: 246.0
  • Bit_score: 377
  • Evalue 1.00e-101
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily similarity KEGG
DB: KEGG
  • Identity: 61.6
  • Coverage: 237.0
  • Bit_score: 306
  • Evalue 5.80e-81

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 747
ATGACCACGGACGGAACAGGAAACGGCCTGCTGCTGGCCACCGAAAAACTGGCGAAGGAATATCGCGGCCGGCGCGTCGTCAACGGCGTGTCCGTGAACGTCAAGGCGGGCGAGATCGTCGGCCTGCTCGGCCCGAACGGCGCCGGGAAAACAACCACCTTCAGCATGGTCGTCGGCGTGGTTAAACCGGACGAGGGGCGGGTTGATTTTTTGCACCACGAGATCACCCGCATGCCGATGCACAAACGCGCGCGGCTGGGGATTGGTTACCTGACGCAGGAGCCATCGGTGTTCCGCAAGCTGTCGGTGGAGGACAATATCCTGGCGATTTTGGAAACGTGCAAGCTGTCACGCGATGAGCGCGCGGTGCGCTTGAAGTATTTGCTGGAGGAACTGGACCTGACGCCGATTCGCAAGAGCAAGGCGTATCAGTTGAGCGGCGGCGAAAAACGGCGGCTGGAAATCACCCGCGCGCTGGTCACGAGCCCGAAATTGTTGCTGTTGGACGAGCCGTTCAGCGGCATTGATCCGATCGCGGTTTACGAGGTGCAAAAGATTGTCCGCCGCTTGAAGGAGCGCGGCCTGGGCATTCTCATCACCGACCACAATGTGCGGGAAACGCTCAAGCTGATTGACCGCGGCTACATCATCCACAAAGGACAGGTTTTGGTGGAAGGCCCTTCGGAATTTCTGGCCAACGATCCGAAGGCGCGGGAAATTTATTTGGGGCCGGAATTCAACATGTAA
PROTEIN sequence
Length: 249
MTTDGTGNGLLLATEKLAKEYRGRRVVNGVSVNVKAGEIVGLLGPNGAGKTTTFSMVVGVVKPDEGRVDFLHHEITRMPMHKRARLGIGYLTQEPSVFRKLSVEDNILAILETCKLSRDERAVRLKYLLEELDLTPIRKSKAYQLSGGEKRRLEITRALVTSPKLLLLDEPFSGIDPIAVYEVQKIVRRLKERGLGILITDHNVRETLKLIDRGYIIHKGQVLVEGPSEFLANDPKAREIYLGPEFNM*