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berkeley_reactor_200306_planktonic_scaffold_204825

Search features with annotation key words

Displaying items 31-60 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_204825_31
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

33747..34613
DNA (867bp) protein (289aa)
GCN5-related N-acetyltransferase n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HP11_CYAP4
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACL45598.1}; TaxID=395961 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
berkeley_reactor_200306_planktonic_scaffold_204825_32
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(34999..35604)
DNA (606bp) protein (202aa)
Metal dependent phosphohydrolase n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WW84_ACISM
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ADW68467.1}; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
berkeley_reactor_200306_planktonic_scaffold_204825_33
unknown

Not on your lists

36090..36299
DNA (210bp) protein (70aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_204825_34
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(36324..39317)
DNA (2994bp) protein (998aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Isoleucine--tRNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPZ7_9BACT
isoleucyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_204825_35
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(39577..40428)
DNA (852bp) protein (284aa)
6-phosphogluconate dehydrogenase NAD-binding n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ05_9BACT
6-phosphogluconate dehydrogenase NAD-binding {ECO:0000313|EMBL:EEF58102.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
6-phosphogluconate dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_204825_36
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

41328..42698
DNA (1371bp) protein (457aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCQ3_9BACT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
chromosomal replication initiator protein DnaA
berkeley_reactor_200306_planktonic_scaffold_204825_37
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

42774..43763
DNA (990bp) protein (330aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCQ4_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF62250.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter
berkeley_reactor_200306_planktonic_scaffold_204825_38
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(43821..45170)
DNA (1350bp) protein (450aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL81_9BACT
zraS; sensor protein ZraS
berkeley_reactor_200306_planktonic_scaffold_204825_39
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(45176..48310)
DNA (3135bp) protein (1045aa)
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family id=14623092 bin=bin5_DeltaP species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
acriflavin resistance protein
Tax=RBG_13_Nitrospirae_43_8_curated
berkeley_reactor_200306_planktonic_scaffold_204825_40
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48307..49443)
DNA (1137bp) protein (379aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G433_GEOUR
RND family efflux transporter MFP subunit
Tax=RBG_13_Deltaproteobacteria_61_14_curated
berkeley_reactor_200306_planktonic_scaffold_204825_41
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49436..50104)
DNA (669bp) protein (223aa)
Transcriptional regulator, TetR family n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q3N1_STANL
TetR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
berkeley_reactor_200306_planktonic_scaffold_204825_42
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(50239..51693)
DNA (1455bp) protein (485aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
gatA; glutamyl-tRNA amidotransferase (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMP1_9BACT
berkeley_reactor_200306_planktonic_scaffold_204825_43
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(51702..51989)
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMN9_9BACT
glutamyl-tRNA amidotransferase
berkeley_reactor_200306_planktonic_scaffold_204825_44
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(52093..52389)
DNA (297bp) protein (99aa)
Phosphotransferase system, phosphocarrier protein HPr n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMN8_9BACT
Phosphotransferase system, phosphocarrier protein HPr {ECO:0000313|EMBL:EEF58937.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phosphocarrier protein HPr
berkeley_reactor_200306_planktonic_scaffold_204825_45
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(52465..53427)
DNA (963bp) protein (321aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
HPr kinase/phosphorylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMN7_9BACT
hprK; Serine kinase of the HPr protein, regulates carbohydrate metabolism
berkeley_reactor_200306_planktonic_scaffold_204825_46
unknown

Not on your lists

53522..54346
DNA (825bp) protein (275aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_204825_47
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(54392..55138)
DNA (747bp) protein (249aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMN6_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF58935.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily
berkeley_reactor_200306_planktonic_scaffold_204825_48
unknown

Not on your lists

comp(55135..55683)
DNA (549bp) protein (183aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_204825_49
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(55680..56144)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMN5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58934.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_204825_50
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(56141..56683)
DNA (543bp) protein (181aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMN4_9BACT
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family {ECO:0000313|EMBL:EEF58933.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_204825_51
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(56787..57623)
DNA (837bp) protein (279aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMN3_9BACT
berkeley_reactor_200306_planktonic_scaffold_204825_52
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(57644..58951)
DNA (1308bp) protein (436aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|RuleBase:RU003565, ECO:0000256|SAAS:SAAS00083544}; EC=2.7.7.27 {ECO:0000256|RuleBase:RU003565, ECO:0000256|SAAS:SAAS00083544};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMJ3_9BACT
berkeley_reactor_200306_planktonic_scaffold_204825_53
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(59084..60364)
DNA (1281bp) protein (427aa)
GTPase HflX n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPW1_9BACT
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hflX; GTP-binding protein protease modulator
berkeley_reactor_200306_planktonic_scaffold_204825_54
GWC2_Planctomycetes_49_10_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(60449..60817)
DNA (369bp) protein (123aa)
Tax=GWC2_Planctomycetes_49_10_curated
berkeley_reactor_200306_planktonic_scaffold_204825_55
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(60884..62911)
DNA (2028bp) protein (676aa)
Pseudouridine synthase, RluA family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHZ1_9BACT
Pseudouridine synthase, RluA family {ECO:0000313|EMBL:EEF60484.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
RluA family pseudouridine synthase
berkeley_reactor_200306_planktonic_scaffold_204825_56
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(62923..63861)
DNA (939bp) protein (313aa)
Transcriptional regulator, LysR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D612_9BACT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EDY18215.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_204825_57
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(64132..65022)
DNA (891bp) protein (297aa)
Alpha/beta hydrolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLU1_9BACT
Alpha/beta hydrolase {ECO:0000313|EMBL:EEF59198.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
endo-1,4-beta-xylanase
berkeley_reactor_200306_planktonic_scaffold_204825_58
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(65019..66002)
DNA (984bp) protein (328aa)
Glycosyl hydrolase family 43 protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NKS6_9SPHI
ricin B lectin
Ricin B lectin {ECO:0000313|EMBL:AHF14594.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_204825_59
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

66250..68403
DNA (2154bp) protein (718aa)
UvrABC system protein B n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1F3_9BACT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
excinuclease ABC subunit B
berkeley_reactor_200306_planktonic_scaffold_204825_60
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

68443..68937
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000382DCE6
hypothetical protein
Tax=BJP_IG2158_Zixibacteria_48_33
Displaying items 31-60 of 104 in total

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