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berkeley_reactor_200306_planktonic_scaffold_204825_55

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(60884..62911)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase, RluA family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHZ1_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 71.5
  • Coverage: 594.0
  • Bit_score: 884
  • Evalue 5.00e-254
Pseudouridine synthase, RluA family {ECO:0000313|EMBL:EEF60484.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.5
  • Coverage: 594.0
  • Bit_score: 884
  • Evalue 7.00e-254
RluA family pseudouridine synthase similarity KEGG
DB: KEGG
  • Identity: 59.6
  • Coverage: 599.0
  • Bit_score: 723
  • Evalue 5.40e-206

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 2028
ATGATGTGGTGGTTCCGGGATTCAAAGCGCAAACCCGCCATTTCACGCGCGTCGCTGTTCCGAATATTTGAGACCTTTCCGTCCGCTCGGATTTTCCGCGAGGACGCGGAAAATGGCACCCGGGACGGGCGCGCTCCCAATTCCATTTCTGTTTTCGAGTTCAATCAGCCGACTCCCAGCCAGCTTCTTCGCACGCTGGCGTCCCGCGAGGAATCTGTTATCCTGCTCACCCTTTTGATGAATTCAATTGTCAACATCGCGGCTTACAAGTTTGTGGAACTGCCGGAACTGCGTTCGCTCCGGGCGCGGCTGCTGGCGTTGTGCAAAAGCTGGGAACTGAAAGGCACGATTCTCCTGAGCGTGGAAGGCATCAACCTGTTCGTGGCGGGGACGACGGATAAAATTGATTTGTTGCTGGCCGAATTACGCGGCGTTCCGGGCTTGGAAGATTTGTCGCCCAAATTCAGCGAAACGGATCACCAGCCTTTCCGCCGAATGCTGGTGCGGATCAAAAAGGAAATCATCGCGTTTGGCGTGGCAGGCATCAATCCGGCGCAGCGCACGTCGCCAAAATTGTCGGCGAAGGAACTCAAGCAATGGCTCGACGAAGGCCGGCCGGTGACGTTGCTCGACACGCGCAACGATTACGAGGTGAAGCTGGGCACGTTCAAGCAGGCGCTGCCGATTGGCATTGATCATTTCCGCGATTTTCCCGCAGCGGTGCGCCAGCTGCCGGCGCCATTGAAGGAACAGCCGATTGTGATGTTTTGCACCGGCGGCATTCGTTGCGAGAAGGCCGGGCTGTTCATGGAGATGGAAGGGTTCAAACATGTTTTCCAGCTCGAGGGCGGCATTTTGAAGTATTTCGAGGAATGCGGCGGGGCGCATTACGCCGGCGAATGTTTTGTGTTCGACCAGCGCGTGGGACTGGACCCCAGCCTGCACGAAACGGAATCGCGGCAATGTTTTCAGTGTCAGACGCCGTTGACCGAGGCGGACCAAAACGATTCGCGTTATGTGCCGGGGCAGTCGTGTCCGTATTGTTTTAAAACGCCGGCGGAACAAATGGCGCTGAACCTGACGCGGCGGCATGAAGCCATCCGCCGCGCCGTGACGCCGTTGCCGGGCAGCCGGCCTTACGAAAATTTCAAGCCGGTGAATGTCCCGCAAGCTGCCGATGGCGCCACAATTCTCGACGTGCTTTGTCGCGTGGTGAAACATTTGCCGCGCGCGCATTGGGAACAGGAATGCGCGCGCGGACTCATCGTGGATTGGCAGCGTCAGCCCGTGCCGGCCTCGCATCGCGTCCGGGCGGGCGAGCGTTACCTGCATGTGTTTCCGGACACCGTCGAGCCGGACGTGAATGGCAACATCGAAATTTTGCACGAGGATGAAGCGTTGATCGTGCTGAACAAACCTGCGCCGCTGCCGATGCACGCGGGCGGACGTTTCGCCCGCAACACCCTGAGTTACCTGCTGGAAATGGTTTATCATCCGCAAAAGCCGCATCCGGCGCACCGGCTGGATGCCAACACCACGGGCATTGTGCTGGTCACGCGCACGCGGCATTTCGCCGGCAAATTGCAACCGCAGTTCGCGCGCGGCACGGTGGAGAAACAGTATCTGGTGCGGGTGCTGGGACAGCCGCCGGACGATGTCTTCGCCTGCGAGGCGCCGATCAGCGCGGAGTCGGGTGAACTCGGTTCGCGCACGGTGGATGAAACCTTCGGTCTGGCGGCGCGCACGGAATTTCGCGTCTTGCAGCGTCATGCGGATGGCACCGCCTTGCTGGAAGCGCGACCGCTGACCGGACGCACGAATCAAATCCGCATTCATCTCTGGCACCTCGGTTTTCCCGTGTGCGGCGATCCGGTTTATTTGCCGAACCGGAAAATGGGCGACACGCAGACGCTGGACGTGGCGGATGCGCCGCTGTGCTTGCACGCGTGGCAGATCCGGTTTGAGCATCCGTTGACGCGGCAGCCGGCGCATTTCACCGCGCCGCCGCCCGCGTGGGCGACGTGGTGA
PROTEIN sequence
Length: 676
MMWWFRDSKRKPAISRASLFRIFETFPSARIFREDAENGTRDGRAPNSISVFEFNQPTPSQLLRTLASREESVILLTLLMNSIVNIAAYKFVELPELRSLRARLLALCKSWELKGTILLSVEGINLFVAGTTDKIDLLLAELRGVPGLEDLSPKFSETDHQPFRRMLVRIKKEIIAFGVAGINPAQRTSPKLSAKELKQWLDEGRPVTLLDTRNDYEVKLGTFKQALPIGIDHFRDFPAAVRQLPAPLKEQPIVMFCTGGIRCEKAGLFMEMEGFKHVFQLEGGILKYFEECGGAHYAGECFVFDQRVGLDPSLHETESRQCFQCQTPLTEADQNDSRYVPGQSCPYCFKTPAEQMALNLTRRHEAIRRAVTPLPGSRPYENFKPVNVPQAADGATILDVLCRVVKHLPRAHWEQECARGLIVDWQRQPVPASHRVRAGERYLHVFPDTVEPDVNGNIEILHEDEALIVLNKPAPLPMHAGGRFARNTLSYLLEMVYHPQKPHPAHRLDANTTGIVLVTRTRHFAGKLQPQFARGTVEKQYLVRVLGQPPDDVFACEAPISAESGELGSRTVDETFGLAARTEFRVLQRHADGTALLEARPLTGRTNQIRIHLWHLGFPVCGDPVYLPNRKMGDTQTLDVADAPLCLHAWQIRFEHPLTRQPAHFTAPPPAWATW*