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berkeley_reactor_200306_planktonic_scaffold_198771_6

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(6780..8516)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK77_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 49.7
  • Coverage: 338.0
  • Bit_score: 285
  • Evalue 1.10e-73
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF59715.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.7
  • Coverage: 338.0
  • Bit_score: 285
  • Evalue 1.60e-73
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 45.0
  • Coverage: 322.0
  • Bit_score: 246
  • Evalue 1.70e-62

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1737
ATGAGCATGACCCCCGATTCCGAACTTCTCCGGCATTTTGCCCGGACCAATTCTGAAGACGCCTTCGCGGAACTGGTGAAACGGCACGTGAATCTGGTTTATTCCGCCGCGCTCCGGCAGGTCGGAGGCGATGCGCATCTCGCCAAGGATGTCGCCCAAACTGTGTTCACCGACCTGGCGCGCAAGGCCAGCGCCCTTTCCCGCCGCCACCATCTCTCCGGCTGGCTTTACACCAGCACCCACTTCGCCGCCGCCAAAATGACCCGCTCCGAAACCCGCCGGCGCGACCGCGAGGATAAATTTATGCGCGAACCCAACACTGAATCCGCGCCCGCCGCCGAGTGGGAACACCTGCGTCCCCTGCTCGATGACGTCATACACGAACTCAAGGAAGCCGACCGCAACGCCATTCTGCTGCGCTATTTTGAAAACCGCCCCTTCGCCGAAGTCGGAGCTAAATTCGGACTGAACGAAAACGCCGCGCGGATGCGCGTCGAACGCGCCCTGGAAAAATTGCGCGCCATTTTTGCCAAACGCGGCGTGATGACCACTTCCGCACTGACGGCAGCCATTTCTGCTAATGCCGTCCAACTGACGCCAGCGCCTTTGGCGACATCGCTGACCGCCTTGGCGCTGGCCGGCGCTGGAACTGGGAGTTTTGCGTTTATGAAACTGATGAACTGGACCTATCTGAAAACAGGCCTCGCCGCACTCGTCCTGGCAAGCGGTATTGCTGCCATTGTAATGCAGCACCAGACACAGGAAAAACTGCGCCGTAAAAATGCAGCCTTCCAGCAGCAAATCGCAGAACTGCAGACCGACAATCAGGGTTTTTCTAACCGGCTGGCTTCAGTCGGCGACGCAAATAAGCTGTCTGAAAAGCAGTTCAATGAGTTGTTGAAATTGCGTGGCGAGGTCGGTGTGCTACGTAAACAGACCAGTGATTTGAGCCAGGATAATGAGATGTTAAAAAGACGGCTGGCTGTTGTTTCAAGGATGGAAACCAATCAAGTGCCAACTCCGCAACTGCATATTAAAGCAAGGTTCATCGCCATCCCCAAGGATGGTTTTTCAACGCAGATCGGCGGCATTAACGGAGCGACCGGCATTTTGGGCTATCAGAACTTTACCAACCTGTTTGCCATATTGAAGCGGCGCGCCGGGGTGGAGGTTTTGGCCGAACCCGAAGCGACCACTACCAGTGGCAGGCAAGTCCAGATGCGGGCGACACAGGTTGAAACGGTCATCACTAATTTTGCCCTCGTGGAGTCCAACGGGGCAAGTGCAGTGGTCCCGCAATCTTGTCAGGTTGAAACCGGGCCCATTATAGATGTGACTCCGCAAATTCTGTCGGATGGCCGCACCATCACATTGCCCATAGACGCTTCGGTCACTGATTTTCTTGGTTATGGGCAGCCGACCAATAATCCAGTGCCCAATTATACAAAAGACGGCGAGGAGGTTGATGTGCCGCAAGTGCTGCCGCAGTTCCGCGTGCAGCAAGCCAGCGCCAAAGTAAATATGTGGGACGATCAAACGTTGGTGCTAAAATTGCCGGACAAGCAAGTTCCCAGTCATGCTTCTCTGCAATCATCAAATGATCCCAAAGTGCAAGAACCTCTCAGAAATACCCTAGTTTTTGTCACGGTCACCATGATTGATGCAGCGGGGAATAAGGAATACAAGCTAAACGAAAGCGATTCGGTTCCCGCTCAACCGGATTCATCTACCAACTAA
PROTEIN sequence
Length: 579
MSMTPDSELLRHFARTNSEDAFAELVKRHVNLVYSAALRQVGGDAHLAKDVAQTVFTDLARKASALSRRHHLSGWLYTSTHFAAAKMTRSETRRRDREDKFMREPNTESAPAAEWEHLRPLLDDVIHELKEADRNAILLRYFENRPFAEVGAKFGLNENAARMRVERALEKLRAIFAKRGVMTTSALTAAISANAVQLTPAPLATSLTALALAGAGTGSFAFMKLMNWTYLKTGLAALVLASGIAAIVMQHQTQEKLRRKNAAFQQQIAELQTDNQGFSNRLASVGDANKLSEKQFNELLKLRGEVGVLRKQTSDLSQDNEMLKRRLAVVSRMETNQVPTPQLHIKARFIAIPKDGFSTQIGGINGATGILGYQNFTNLFAILKRRAGVEVLAEPEATTTSGRQVQMRATQVETVITNFALVESNGASAVVPQSCQVETGPIIDVTPQILSDGRTITLPIDASVTDFLGYGQPTNNPVPNYTKDGEEVDVPQVLPQFRVQQASAKVNMWDDQTLVLKLPDKQVPSHASLQSSNDPKVQEPLRNTLVFVTVTMIDAAGNKEYKLNESDSVPAQPDSSTN*