ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_207894_19

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(19968..20873)

Top 3 Functional Annotations

Value Algorithm Source
Peptidoglycan-binding LysM n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSR2_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 27.7
  • Coverage: 311.0
  • Bit_score: 109
  • Evalue 3.40e-21
Peptidoglycan-binding LysM {ECO:0000313|EMBL:EEF57114.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 27.7
  • Coverage: 311.0
  • Bit_score: 109
  • Evalue 4.80e-21

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 906
ATGCGCTCCAAAACGGGTTTTTGTTTGCTGGTCTCACTGGCCTTTTTTCTGAACGGCATTTCTCCGGCGCACTCCGCAGCTGCGGATGGCGGTGAAACGGCTGGCAATTTGCTGGCACGACCTGCGATTGTGGATTGGCACAGCGTCGAATCCGACGATTATCTGGCTTACGTCAAAAACCTGGAAACCATCGGCTGCCCGGCGCAAACCATCCGGACCATTGTCACCGCGGATGTCATTGCCGCCTTTGCCGGAAAGCGTGCGGAAGCCGTGACCGCCCGGTTTCAGAATTTCCAGTATTGGCAGGCCAATCCGGACGAAACAAAAGCCCGCGCGGAACTGGCCGCCCGGCGACGCGGCATAGACGAGGAAATGAACCGCCTTTTGCAACAACTGCTCGGCCCGGAAACGGATCTGCCGGATGTCAGCCGCGAATGGCAGCGCGAAACCTGGAATCAGGAACTGAATTTTCTAACTTCAAAAAAGCGCGACGCCACCGTGGCGATTTTGCAGCAGTATGAACGGGTGAATCAGCAGATGAAGGAGTTGGCCGGCGGCGCCAACCTGACCGAAGATACCAACGCCCTGCAACGCATTCTCCAGCAGTCCAGGGAGGAAAAATCCACGTTGGAAACAGTGCTCTCGCCAACGGAATACCGGCAGGTGGCATTGACCACTTCGTGGACGGCGGAAAATTTGCGCCATGCGCTGGTTCATTTCGAACCAACGCCGGCGGAATTTGACATTATCTTTGACGCCTGGAAGCCGCTGGATGACAAGCTGTCAACGATCCACGCCTTGCGTCAGCCGGATCCGGGCAACCTCGAACAGGAGGCGTATGCCAAAATCAAATCGCAACTGAGCGCGTCACGCTATCAGCAATACTGCGATACGTGGTGGAAATGA
PROTEIN sequence
Length: 302
MRSKTGFCLLVSLAFFLNGISPAHSAAADGGETAGNLLARPAIVDWHSVESDDYLAYVKNLETIGCPAQTIRTIVTADVIAAFAGKRAEAVTARFQNFQYWQANPDETKARAELAARRRGIDEEMNRLLQQLLGPETDLPDVSREWQRETWNQELNFLTSKKRDATVAILQQYERVNQQMKELAGGANLTEDTNALQRILQQSREEKSTLETVLSPTEYRQVALTTSWTAENLRHALVHFEPTPAEFDIIFDAWKPLDDKLSTIHALRQPDPGNLEQEAYAKIKSQLSASRYQQYCDTWWK*