ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_26454_121

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(131200..131799)

Top 3 Functional Annotations

Value Algorithm Source
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CF76_SPHS2 similarity UNIREF
DB: UNIREF100
  • Identity: 45.6
  • Coverage: 193.0
  • Bit_score: 174
  • Evalue 7.50e-41
Uncharacterized protein {ECO:0000313|EMBL:GAL85907.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 47.7
  • Coverage: 193.0
  • Bit_score: 192
  • Evalue 4.90e-46
Crp/Fnr family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 45.6
  • Coverage: 193.0
  • Bit_score: 174
  • Evalue 2.10e-41

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sporocytophaga myxococcoides → Sporocytophaga → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 600
ATGTTGGAACTACTATTCGCTGAGATTGCCAAAGAGGTAGAGCTGACGGCGGCCGAAAAGGCCCTGCTGCAGGCTGCTATAACCCAGCGCAAACTGCGTAAACGGCAATACCTGATGCAGCACGGAGAACACTTCGGTGAAATTGCCTTCGTGAACAAGGGTATGTTGCGGGCCTGCCTGAAGGGCGAAAAGGGTGCCGAACACGTAATGCAGTTTGCTCCGGAAGGCACCTGGATTCCCGACAGCTTCAATCTTTCGGAAGATGATACCGCCCTTTATGATATTGATGCGCTCGAAAATGCGGAGGTATTGCTGATCGATCGTAAAGTATTCCAGCAATTGCTGCAACGCGTACCGGCGCTGGAAAAATATTTCCGTCAGGTAATGCAGAAGCGGCTCAATGCCCTGCACCTGCGGGTCATCAATTACCTGACCCACTTTGCAGAAGATAAATACAAGATGTTCGTGGATACGTACCCCGAAATCGTACAGCGGGTACCGCAACATATGATCGCCTCTTACCTGGGTATCAAACCCGAAACCCTGAGCCGGAACCGCAAAAAGATGGCTACCCGTAAAAAGGAAGAGCCCGAATTATAG
PROTEIN sequence
Length: 200
MLELLFAEIAKEVELTAAEKALLQAAITQRKLRKRQYLMQHGEHFGEIAFVNKGMLRACLKGEKGAEHVMQFAPEGTWIPDSFNLSEDDTALYDIDALENAEVLLIDRKVFQQLLQRVPALEKYFRQVMQKRLNALHLRVINYLTHFAEDKYKMFVDTYPEIVQRVPQHMIASYLGIKPETLSRNRKKMATRKKEEPEL*