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berkeley_reactor_200306_planktonic_scaffold_69065_44

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(56003..56488)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PL63_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 49.7
  • Coverage: 161.0
  • Bit_score: 154
  • Evalue 6.50e-35
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KIC92196.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.4
  • Coverage: 161.0
  • Bit_score: 157
  • Evalue 8.20e-36
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 49.7
  • Coverage: 161.0
  • Bit_score: 154
  • Evalue 1.80e-35

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Taxonomy

Flavihumibacter sp. ZG627 → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 486
ATGACCACTACTGAATACAATCAATGCGTACGTGAACTGGCCGATGGCCTGTACCGCTTTGCATGCAAAAGCATGAATGATCAGGAGGAGGCCAAAGATGTGGTACAGCAAGCCTTTGTGACCCTGTGGGAAAAACGGGAAGCGGTGGCAGCGGAGAAAGGGAAGAGTTTCCTGTTTACGATCGTATACCGGCGTTGCATGGATATACACCGAACGCGGGGCCGGACCAGCAGCACCGAAAACCTGAACGAAAGCTTCCTGACCGAACAACCCAAACCGCACGACCTGAAAAAAATATTACAAAATGCCCTGGCTACCCTCGATGTACAAGCCAAAAACCTGATTCTGCTAAAAGACTATGAAGGATACAGCTATGATGAAATCGCTACACTGACAGATTTGAATACCACACAAGTAAAAGTGTATCTCCACCGTGCACGAAAAGAATTGAGACAGTACCTGGTAAGTAGAGAACATATAATCTGA
PROTEIN sequence
Length: 162
MTTTEYNQCVRELADGLYRFACKSMNDQEEAKDVVQQAFVTLWEKREAVAAEKGKSFLFTIVYRRCMDIHRTRGRTSSTENLNESFLTEQPKPHDLKKILQNALATLDVQAKNLILLKDYEGYSYDEIATLTDLNTTQVKVYLHRARKELRQYLVSREHII*