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berkeley_reactor_200306_planktonic_scaffold_69065

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Displaying items 1-30 of 116 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_69065_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(845..2911)
DNA (2067bp) protein (689aa)
Endothelin-converting enzyme 1 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNI6_9SPHI
Peptidase M13 {ECO:0000313|EMBL:AHF15270.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase M13
berkeley_reactor_200306_planktonic_scaffold_69065_2
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3109..3534
DNA (426bp) protein (142aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
3-dehydroquinate dehydratase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RXJ2_LEAB4
3-dehydroquinate dehydratase
berkeley_reactor_200306_planktonic_scaffold_69065_3
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4007..6043
DNA (2037bp) protein (679aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QC13_SPILD
Uncharacterized protein {ECO:0000313|EMBL:KGE85846.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylibacter xiamenensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_69065_4
CG_Bacteroid_02, Bacteroidetes, Bacteria

Not on your lists

6553..8604
DNA (2052bp) protein (684aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QC13_SPILD
hypothetical protein
Tax=CG_Bacteroid_02
berkeley_reactor_200306_planktonic_scaffold_69065_5
CG_Bacteroid_02, Bacteroidetes, Bacteria

Not on your lists

9142..11205
DNA (2064bp) protein (688aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB34_CHIPD
hypothetical protein
Tax=CG_Bacteroid_02
berkeley_reactor_200306_planktonic_scaffold_69065_6
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11283..11930)
DNA (648bp) protein (216aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
Ribulose-phosphate 3-epimerase n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R8T0_OWEHD
ribulose-phosphate 3-epimerase
berkeley_reactor_200306_planktonic_scaffold_69065_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12560..14203
DNA (1644bp) protein (548aa)
Replicative DNA helicase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU44_CHIPD
Replicative DNA helicase {ECO:0000313|EMBL:GAO45004.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
replicative DNA helicase
berkeley_reactor_200306_planktonic_scaffold_69065_8
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

14316..14768
DNA (453bp) protein (151aa)
D-tyrosyl-tRNA deacylase n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S3U1_9FLAO
D-tyrosyl-tRNA(Tyr) deacylase
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
berkeley_reactor_200306_planktonic_scaffold_69065_9
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14831..15586
DNA (756bp) protein (252aa)
demethylmenaquinone methyltransferase (EC:2.1.1.-)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; Flags: Precursor;; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
Demethylmenaquinone methyltransferase n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TTE9_MARTH
berkeley_reactor_200306_planktonic_scaffold_69065_10
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15633..16340
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSP7_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU64496.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_69065_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16537..17142
DNA (606bp) protein (202aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
superoxide dismutase n=1 Tax=Niabella aurantiaca RepID=UPI00035D3197
superoxide dismutase
berkeley_reactor_200306_planktonic_scaffold_69065_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17636..19378)
DNA (1743bp) protein (581aa)
ABC transporter related n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU02_CHIPD
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACU64597.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_69065_13
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(19551..21851)
DNA (2301bp) protein (767aa)
TonB-dependent receptor plug id=4446309 bin=GWF2_Ignavibacteria_33_9 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
TonB-dependent receptor plug
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
berkeley_reactor_200306_planktonic_scaffold_69065_14
Tamlana nanhaiensis, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21980..23368)
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI00037D8337
Uncharacterized protein {ECO:0000313|EMBL:KJD31082.1}; TaxID=1382798 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana nanhaiensis.;"
berkeley_reactor_200306_planktonic_scaffold_69065_15
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23532..24818)
DNA (1287bp) protein (429aa)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PI63_CHIPD
prolipoprotein diacylglyceryl transferase
Prolipoprotein diacylglyceryl transferase {ECO:0000313|EMBL:ACU63625.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_69065_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24898..25389)
DNA (492bp) protein (164aa)
UPF0234 protein Cpin_6212 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PI56_CHIPD
hypothetical protein
UPF0234 protein Cpin_6212 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_69065_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(25488..26741)
DNA (1254bp) protein (418aa)
S-adenosylmethionine synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQZ8_NIAKG
methionine adenosyltransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_69065_18
unknown

Not on your lists

comp(26844..27383)
DNA (540bp) protein (180aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_69065_19
Myroides odoratus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27410..28120)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035D0F78
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ43717.1}; TaxID=929704 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratus DSM 2801.;"
berkeley_reactor_200306_planktonic_scaffold_69065_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28235..28813)
DNA (579bp) protein (193aa)
UPF0301 protein NiasoDRAFT_0083 n=1 Tax=Niabella soli DSM 19437 RepID=H1NRN3_9SPHI
hypothetical protein
UPF0301 protein NIASO_10730 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_69065_21
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29011..30288
DNA (1278bp) protein (426aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Histidine kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSM2_CHIPD
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_69065_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30624..30983
DNA (360bp) protein (120aa)
Transcriptional regulator, ArsR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PL99_CHIPD
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACU58443.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_69065_23
unknown

Not on your lists

31413..32951
DNA (1539bp) protein (513aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00037F6E35
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_69065_24
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33029..35656
DNA (2628bp) protein (876aa)
DNA mismatch repair protein MutS n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB24_CHIPD
DNA mismatch repair protein MutS
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_69065_25
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

35806..37314
DNA (1509bp) protein (503aa)
carbon-nitrogen hydrolase n=1 Tax=Riemerella columbina RepID=UPI000363148D
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:EOR30668.1}; TaxID=1216967 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535.;"
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
berkeley_reactor_200306_planktonic_scaffold_69065_26
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

37609..38256
DNA (648bp) protein (216aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
peptidylprolyl isomerase n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B7AFE3
peptidylprolyl isomerase
berkeley_reactor_200306_planktonic_scaffold_69065_27
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38406..38666
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SI19_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU12459.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
berkeley_reactor_200306_planktonic_scaffold_69065_28
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(38744..39091)
DNA (348bp) protein (116aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPA8_NIAKG
Putative 4Fe-4S ferredoxin {ECO:0000313|EMBL:GAO45708.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
4Fe-4S ferredoxin
berkeley_reactor_200306_planktonic_scaffold_69065_29
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

39191..40231
DNA (1041bp) protein (347aa)
Acyl-CoA reductase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEF7_CHIPD
acyl-CoA reductase
Acyl-CoA reductase {ECO:0000313|EMBL:ACU63366.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_69065_30
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

41077..42549
DNA (1473bp) protein (491aa)
HtrA2 peptidase {ECO:0000313|EMBL:ACU63367.1}; EC=3.4.21.108 {ECO:0000313|EMBL:ACU63367.1};; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
HtrA2 peptidase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEF8_CHIPD
HtrA2 peptidase
Displaying items 1-30 of 116 in total

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