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berkeley_reactor_200306_planktonic_scaffold_69065

Search features with annotation key words

Displaying items 91-116 of 116 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_69065_91
unknown

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comp(106117..106515)
DNA (399bp) protein (133aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_69065_92
unknown

Not on your lists

comp(106564..106977)
DNA (414bp) protein (138aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_69065_93
unknown

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comp(107064..107468)
DNA (405bp) protein (135aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_69065_94
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(108159..111827)
DNA (3669bp) protein (1223aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9L9_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00212.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_69065_95
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(112008..115682)
DNA (3675bp) protein (1225aa)
PKD domain protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R6G4_OWEHD
Uncharacterized protein {ECO:0000313|EMBL:KJS05296.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
PKD domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_69065_96
unknown

Not on your lists

comp(115831..116049)
DNA (219bp) protein (73aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_69065_97
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(116070..116795)
DNA (726bp) protein (242aa)
Uncharacterized protein id=4122643 bin=GWF2_Bacteroidetes_33_38 species=Cellvibrio sp. BR genus=Cellvibrio taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
PKD domain-containing protein
Tax=GWF2_Bacteroidetes_33_38_curated
berkeley_reactor_200306_planktonic_scaffold_69065_98
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(116799..119708)
DNA (2910bp) protein (970aa)
Nitrous oxidase accessory protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R3C0_OWEHD
nitrous oxidase accessory protein
Nitrous oxidase accessory protein {ECO:0000313|EMBL:AEV31941.1}; Flags: Precursor;; TaxID=926562 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Owenweeksia.;" source="Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL; B-23963).;"
berkeley_reactor_200306_planktonic_scaffold_69065_99
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

119977..121989
DNA (2013bp) protein (671aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00034658AE
Aminopeptidase {ECO:0000313|EMBL:EOR94417.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
aminopeptidase
berkeley_reactor_200306_planktonic_scaffold_69065_100
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

122165..122743
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI000378C88F
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:KGE86358.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylibacter xiamenensis.;"
ECF subfamily RNA polymerase sigma-24 subunit
berkeley_reactor_200306_planktonic_scaffold_69065_101
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

122751..124745
DNA (1995bp) protein (665aa)
Cell wall surface anchor family protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUT9_OPITP
cell wall surface anchor family protein
Cell wall surface anchor family protein {ECO:0000313|EMBL:ACB74973.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_69065_102
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(124949..125596)
DNA (648bp) protein (216aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQE7_NIAKG
ATP-dependent Clp protease proteolytic subunit
berkeley_reactor_200306_planktonic_scaffold_69065_103
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(125658..126353)
DNA (696bp) protein (232aa)
ATP-dependent Clp protease ClpP n=1 Tax=Segetibacter koreensis RepID=UPI00037A5DF3
ATP-dependent Clp protease proteolytic subunit ClpP
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_69065_104
Cellulophaga baltica, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(126694..127098)
DNA (405bp) protein (135aa)
Endoribonuclease L-PSP n=1 Tax=Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) RepID=E6X440_CELAD
dfrA
DfrA {ECO:0000313|EMBL:AIZ42272.1}; TaxID=1348584 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga baltica 18.;"
berkeley_reactor_200306_planktonic_scaffold_69065_105
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

127113..127769
DNA (657bp) protein (219aa)
Contig98, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75478.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
peptidase, M22 family protein id=1959462 bin=GWE2_Bacteroidetes_29_8 species=Flavobacteriaceae bacterium S85 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_29_8 organism_group=Bacteroidetes organism_desc=Good
peptidase M22 glycoprotease
berkeley_reactor_200306_planktonic_scaffold_69065_106
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

127804..128319
DNA (516bp) protein (172aa)
Thioesterase superfamily protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMC9_NIAKG
thioesterase superfamily protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_69065_107
Pseudanabaena sp. PCC 7367, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

128414..128917
DNA (504bp) protein (168aa)
Membrane-flanked domain DUF304 n=1 Tax=Pseudanabaena sp. PCC 7367 RepID=K9SL30_9CYAN
membrane protein
Membrane-flanked domain DUF304 {ECO:0000313|EMBL:AFY71287.1}; TaxID=82654 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena sp. PCC 7367.;"
berkeley_reactor_200306_planktonic_scaffold_69065_108
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

128940..130016
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036D8D9A
hypothetical protein
Tax=GWC2_Ignavibacteria_rel_36_12_curated
berkeley_reactor_200306_planktonic_scaffold_69065_109
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(130572..132470)
DNA (1899bp) protein (633aa)
DNA polymerase III, subunits gamma and tau n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSN6_CHIPD
DNA polymerase III subunit gamma/tau {ECO:0000313|EMBL:KIC92809.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
DNA polymerase III subunits gamma and tau
berkeley_reactor_200306_planktonic_scaffold_69065_110
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

132609..133604
DNA (996bp) protein (332aa)
Putative uncharacterized protein id=3925902 bin=GWF2_Bacteroidetes_35_48 species=Indibacter alkaliphilus genus=Indibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
BNR repeat-containing glycosyl hydrolase
Tax=GWF2_Bacteroidetes_35_48_curated
berkeley_reactor_200306_planktonic_scaffold_69065_111
CG_Bacteroid_02, Bacteroidetes, Bacteria

Not on your lists

133738..134322
DNA (585bp) protein (195aa)
Sigma-70 family RNA polymerase sigma factor n=3 Tax=Porphyromonadaceae RepID=G9S7M1_9PORP
ECF subfamily RNA polymerase sigma-24 subunit
Tax=CG_Bacteroid_02
berkeley_reactor_200306_planktonic_scaffold_69065_112
unknown

Not on your lists

134303..135550
DNA (1248bp) protein (416aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_69065_113
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

135676..137199
DNA (1524bp) protein (508aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Lysine--tRNA ligase n=1 Tax=Niabella soli DSM 19437 RepID=H1NTJ7_9SPHI
lysyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_69065_114
Pseudomonas kilonensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137221..137580
DNA (360bp) protein (120aa)
Glyoxalase family protein n=1 Tax=Pseudomonas fluorescens Q8r1-96 RepID=I4L078_PSEFL
Glyoxalase {ECO:0000313|EMBL:KKA08297.1}; TaxID=132476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas kilonensis.;"
glyoxalase
berkeley_reactor_200306_planktonic_scaffold_69065_115
Flavobacterium indicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

137619..138581
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XTK2_FLAIG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG52799.1}; TaxID=1094466 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9).;"
berkeley_reactor_200306_planktonic_scaffold_69065_116
unknown

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comp(138681..138878)
DNA (198bp) protein (66aa)

This feature has no annotations

Displaying items 91-116 of 116 in total

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