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berkeley_reactor_200306_planktonic_scaffold_151594_33

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: comp(40364..45784)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
Uncharacterized protein n=5 Tax=Escherichia coli RepID=S0UR97_ECOLX similarity UNIREF
DB: UNIREF100
  • Identity: 39.1
  • Coverage: 1883.0
  • Bit_score: 1211
  • Evalue 0.0
Uncharacterized protein {ECO:0000313|EMBL:KHD06508.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.4
  • Coverage: 1849.0
  • Bit_score: 1212
  • Evalue 0.0
DEAD/DEAH box helicase similarity KEGG
DB: KEGG
  • Identity: 38.2
  • Coverage: 1862.0
  • Bit_score: 1159
  • Evalue 0.0

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Taxonomy

Candidatus Thiomargarita nelsonii → Thiomargarita → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 5421
ATGAATGATACCCCTACGATTCAATCAGTAGTTGAGTCCCTCGCTGAGGATCTGAAGAGCTACCTTGAGGCACAATATCACGTGCGTGATGAAGCCGCTTTGAAGGAGCGGCGTGCATTGCTCGATAACGATGCAACTATCGCACAGATTCCATTCCTCGAATCGACACCGTCGTATGAGTTGACGGCGCCCTACGAAGAAATCGACCTTCCTCCCACAACGAAATCGCTCTTGAGCGCAATTTCGAAGATGAAGGCAGGTCTTTATCCTAGACCATATTTGCACCAAGCCCAGGCATTGCAGGAATTCATCAAGGGTCAAAATATCCTTGCAGCAACTGGAACTGGGTCCGGTAAGACAGAAATCTTTCTCCTCTCAATTCTGTCCGCACTCGCGGAGGAGAGTAGCCTAGGAAAGAATGTGACTGGCCAGTTTGGTTGCCGCGCGTTGATTCTTTACCCAATGAATGCGCTGGTCTCCGACCAACTCGCGCGACTGCGTCTTCTTTTTGGAAATGCTGGCGTTTCTCAGGCACTGAAGGAATTGCGGGGCCGGGTTGCGCGTTTCGCGATGTATACCAGCAGGACGCCGTTCCCCGGTCCTCGGTGTAAGCGGAATAACGATAGGGCCAAGGAATTGTTGGATGCTCGGTATGCTCCGATTTTAGAAGATCCTGTTTATCTCGAGAAGTTGCGCGAGCGGGGTAAATGGCCGGCGAAGGACGTGAAGAGATTTTTCGGCGAAAAGGGCGCTGATTGGAAGAAGCGTCTACTCACGTCTCCTGACGACGTTGAATTGTTGATGCGTCACGAAATTCAGAGCGAGTGCCCAGACATTCTTGTGACGAACTATTCGATGCTCGAATACATGCTCGTCCGTCCTATTGAGCGCCCGATATTTGAGCAGACGCGCGACTGGCTGGCATCCGACCCCAGCACATTTTTCACCATAGTGCTCGATGAAGCCCATATGTATCGCGGGGCTACCGGCGCCGAGGTGTCATTTCTGCTCCGTCGGCTTATTCAACGACTTGACATCCCCCGTGAAAGGGTTCGTTTCATCCTGACAACCGCGAGTGTCGGCTCAGAGCAGAAAGACCAGGATGCGGCACTGAATTTTGCATGCGATTTGACGTCACTGCGTCGAAGCGACAGCGCGAAATTTTCCTACGTGATTGGAGCTAGAGAAAAATTTGTGCAGCCGAGAGCCGCGACTGCCGATGAAGCCAACATTCTAGCGACGTTCGATGGGGGAGCCTTTCAAAGCACCTCGGATCCGGCGGCGCTTCGTTCGATGGTCGAAACGACCTTATCGGCTTTGAGTGTGCCCATTGGCGCATCAGACAGGCTTGCGGACGACCTTTTTGCCGCTTTATCTGGCTTTGGTCCGGCCGGTCTCTTGGTCAATACGATCAGCGGAAACGCGACGCCTCTCAACCGCGTTGCCGAAACAGTGTTTCCCGGATGCGCCCCAGAAGTTGCTGGCAAAGCGCTAGACTCCCTTGTCAGGCTCTGTAATTTCGCAAAAGGACATGCCACTGGTAAGGTCTTTCTGCCAGCGCGTGTGCACCTATTCTTCCGAGGTTTGAGCGGCCTCTATACGTGTAGCAATCCAGAGTGCACCGAGAAGCGGGTGACGACTGAGACGCCTCTGCTTGGACGTATGTTCTCAGAGCCAATGACCGCGTGCGGTTGTGGAGGACGTGTTTTCGAAGTTCTTACCCACCGTGATTGTGGAGCATTCTATCTGCGCTGTTACGTTGACGAGAAGCATCCTCGCCCCGACTTTGCGTGGCATGAGCCTACAACCCATGTTCGCGCGGACGCTTCGAGCGAACCGCAGCGCCTTACAGGCATGCATTTTTTGGTGTCCCGGACTCAACCCGACTTTGATGGGTGGCAACCTTGCTGGTTACAGATTTCCTCCGGTCAAATTCAGTGGACCGCCCCGAATGGCCCCGGCTGGCTTCCTCTCTATGCCCCAGACAACTCCCATAGGAAGAATGCGGCATTTGGAGGCAAACTTTTTGGCGTCTGTCCGTCATGCAGCAAAACCACTCAAAGCAGTGTCACCAAGCCGAGCAAAATAATGGACCTTCAGACCAAGGGCGAGCAGCCTTTCGGTCAACTCATCAAGCGTCAGTTATTTTCCCAGCCACCTGACCTTAAAAAGGCGCTGGATACCTACCCGAATCAGGGACGAAAGACGTTGCTATTTTCGGACGGAAGACAGAAAGCGGCCAGGCTTGCAAAGTCGCTTCCTGAGGAGGTCGAGGCGGACACTTTCCGTGAAATGCTCGCGCTTGGTTACTCGCTGAGCAGTGACGCTCAAGAAACAATTCCTCTCACCAAGGCATACCTGCTCTTTGTTGCTGCGTGTGCGAAAGCCCATGTTGCTCCTTTTGCGGGAGACGATCACGAAAGCCTGCTGAGAGACATTGATGCTTTTAAAAACACTTTCTACGAAGATGTCGATGACTGGTGCAAAAATGGACCCGCCAGAGGGCCGGGCGGATTTATGCAGAATCTCTACCGTCAGGTCTCCGGCGGTCTCTACTCCCTACGATTCATCTGCGCGGGCAGCATATGGCCGCCCCGTCGAAACACGACTCGCCTGCTCAAAAAATTCCCGGCATTGACTGAACAAGACGCGATTGCGCTGGCAATAATCTGGATTCAGGACTTCGCCCGCGACGTCGCAATCGATAAAGAACTCACTAGGGTGCAGCGAGAGTCAATCCAAGGTTTTCGAGCGGGAACGCAATCTTGGGCGCGCAATGGCCGTTTCCCAACTCAGATGCGCGATACCATTGCTCAACTTGGACTTAACGTTGATGCTCTGGAAGAGGAATTGTTAGCGATATACGCGGTGGTCGATACTGATAGCCAAGGCTACTACCTGCGGCCTGATGCGGTATCGCTCCTCATTGACCTAAAGAAAAACTGGCATAGGTGTCGCAAGTGCAAATCCGAAGCCTTGGTGACATTGCAAGGACGCTGCACCTCTTGCGGCTGCCCGGACGTTGACGAAGTTGATCCTGCCGACGACCCGTATGTCCAAACCCGAAAGGGCTTCTGGCGTCAGCCTTTGGTGGACGTGCTGGCTGGAACACACTTGCCGCGATTATTGAGTGCGGAAGAACACACGGCTCAGTTGTCGCACAACGACTCCAGTAGCGGCTCTACCATTATTGAGGACTATGAACTGCGATTTCAGGATATCCTTCGGAAAAATGAGACGCCGATTGATATTCTATCGTGCACGACGACGATGGAGGCAGGTATCGACATCGGCTCGCTTGAAGCAGTGGGTTTGCGGAATGTTCCTCCCCAGCGAGAGAATTATCAGCAGCGCGCGGGTCGGGCAGGTCGTAGAGGCTCGGCCATTTCCACAGTTGTCACATACTGTCAGGGCAATCCCCACGACAACTATTACTACCAGAATGTCCACCTAATCGCGTCGGGCAGTCCTCGCGAACTCATCGTCAAGAGCGACAATCCCAAAATCGCGAGACGACATGTGCATGCGTTTCTGCTCCAAGAATTTTTTGGCACCGAGGTTGATCTGAACACAAGCGCAGACATTCTCAGCAGCCTTGGCAGCCTGGCTGATTTTTACACGAGCCAAGGCGATGTCTCGAAAGAGGCGTTTATTTCGTGGGTGAATAGTGGTCTTGGGACCGGTCTGGCCGAGGCGATTGCGAAATGGGTTTGGGCGTTGCGCGATGTCGATGATGTGAACGAATGGGCGAAAGAAACCTGCGAAGATTTCTGTGCTCAGATTGAGTCACTGACCACCAAGGCGAATGCTGTAATAGCTCGAGAAGAATTTACCCCCGACGACCAAAAGTCCGACCTTCTGAAGTTCTTCTTGGATGAGGCATTGCTGCCGAGCTACGCGTTTCCGACGAATTTGTCAGCCTTCCAGGTCGAAGCTGTCATCTCAGACAACAATAGGCAAAAAATCGGGGTCGTTTATCGTCCATCCCAAAGCGCTCCTAGAGCTTTAACCGAATATGCTCCGGGACGTGTGATCACGATTGATAAAAAGGAATATCTCTCGGCGGCGGTTGTGGCCAATGGGGGGACGACAGATGCGTATCGCGCGCGCGCCTTATTTGATAATCCGCATCGACGGCCTTACGTGTTTTGCAGCGAACCGAGTTGCTGTTATGTCGAAGATGTGGGCGCCGGAGATGGTTCATTCCGAAAAGCCGTTCCATGTCCCCTTTGCTCGGTCGGAACGCTTCGCGTCATGGAGATGATCAGTCCGGAAATCTATCTGCCAGAAGGGTCGGCTCCGATTGCGAAACTCGACGATGAGCCGGATATTACTCGCGCAACGCCAGCTCAGTTTCCGGTTCCCCTCCATCAATCCGATACAGATTTGGAGGAAATTGGTTCTCTTTCGGGCAGCATGAGAATCTACCGGCGAGAACAGGCGGAGCTTGTTGTGGTGAACAAAGGTGACCCCACTGAGCAACTCGGGTTTGAGGTTTGCCGCGAGTGTGGTCTGTCGGGCGTCGTGGGAGCCGGAAAAGTTTTCTTCCCTCATGATACACCGTTTTATGTTCAGGAACGTCCTGCGGCGATGCCAGCCCGTAGGAGGTGCCGCGGCACACGAGAGAACGTGTTTTTAGGCCACCGTTTTAGCACGGACCTTTCAATCATCCGGGCCAACATCACGTCTCCTCTTTGCCAGGATCCGCACGGTCAGAATGCCGACTTTTTGGCCCTCCAAAGTGGGCTACAGACTATCGCAGAAACTTTGACCCTGGCAGCGGCCAAGCACTTCGACGTCGATTATTCAGAGTTTAGTGCGGGTTACCGACTGATAAAGCAAGCTGATGACGAGGTGCCTCTAGTTGCTGAGCTTTACATGTTCGATACGTTGTCCGGCGGCGCTGGCTACTCACAGCAGTTGGCCGATGCCTTCAACGTGGTTCTGAGACATCATGCTTTTGAAATTCTCAAATGCAGCGATGCTGATGGCACCGGTTGCGACCGCTCATGTCATAAATGTCTGCGGCATTATCACAATCAATACTACCACGCCGCGCTGGATCGGCGCTTGGCTGCGGACCTCTTGAAGTTTTTGCTCGATGGCGCAGTAATAGAGAATCCGGCACCGACTCAGCAAAAGGCGCTCCTCAATGGTCTTGCTGGCATGCTGTCCTTCGACGGAATTGATGTTGAGTTCGACGGCCAGGTCGACGGTGTTAGCGCCCCTCTGATAGCACGGGGCCAATATCGCGATGTCGCCGTTTACGTCACTCACGGCTTGATTGCGCCGAACCGGCTGAGCGGGCTGGTGGATGACCTGGATGGCTCGACAACGGCGGTATGCCCGCTCAACGAGTTCTTCCTGACCCGAAACCTCCCAGCTTGCTTCCTCGAGGTAAAACGATGCCTGGGACAATAA
PROTEIN sequence
Length: 1807
MNDTPTIQSVVESLAEDLKSYLEAQYHVRDEAALKERRALLDNDATIAQIPFLESTPSYELTAPYEEIDLPPTTKSLLSAISKMKAGLYPRPYLHQAQALQEFIKGQNILAATGTGSGKTEIFLLSILSALAEESSLGKNVTGQFGCRALILYPMNALVSDQLARLRLLFGNAGVSQALKELRGRVARFAMYTSRTPFPGPRCKRNNDRAKELLDARYAPILEDPVYLEKLRERGKWPAKDVKRFFGEKGADWKKRLLTSPDDVELLMRHEIQSECPDILVTNYSMLEYMLVRPIERPIFEQTRDWLASDPSTFFTIVLDEAHMYRGATGAEVSFLLRRLIQRLDIPRERVRFILTTASVGSEQKDQDAALNFACDLTSLRRSDSAKFSYVIGAREKFVQPRAATADEANILATFDGGAFQSTSDPAALRSMVETTLSALSVPIGASDRLADDLFAALSGFGPAGLLVNTISGNATPLNRVAETVFPGCAPEVAGKALDSLVRLCNFAKGHATGKVFLPARVHLFFRGLSGLYTCSNPECTEKRVTTETPLLGRMFSEPMTACGCGGRVFEVLTHRDCGAFYLRCYVDEKHPRPDFAWHEPTTHVRADASSEPQRLTGMHFLVSRTQPDFDGWQPCWLQISSGQIQWTAPNGPGWLPLYAPDNSHRKNAAFGGKLFGVCPSCSKTTQSSVTKPSKIMDLQTKGEQPFGQLIKRQLFSQPPDLKKALDTYPNQGRKTLLFSDGRQKAARLAKSLPEEVEADTFREMLALGYSLSSDAQETIPLTKAYLLFVAACAKAHVAPFAGDDHESLLRDIDAFKNTFYEDVDDWCKNGPARGPGGFMQNLYRQVSGGLYSLRFICAGSIWPPRRNTTRLLKKFPALTEQDAIALAIIWIQDFARDVAIDKELTRVQRESIQGFRAGTQSWARNGRFPTQMRDTIAQLGLNVDALEEELLAIYAVVDTDSQGYYLRPDAVSLLIDLKKNWHRCRKCKSEALVTLQGRCTSCGCPDVDEVDPADDPYVQTRKGFWRQPLVDVLAGTHLPRLLSAEEHTAQLSHNDSSSGSTIIEDYELRFQDILRKNETPIDILSCTTTMEAGIDIGSLEAVGLRNVPPQRENYQQRAGRAGRRGSAISTVVTYCQGNPHDNYYYQNVHLIASGSPRELIVKSDNPKIARRHVHAFLLQEFFGTEVDLNTSADILSSLGSLADFYTSQGDVSKEAFISWVNSGLGTGLAEAIAKWVWALRDVDDVNEWAKETCEDFCAQIESLTTKANAVIAREEFTPDDQKSDLLKFFLDEALLPSYAFPTNLSAFQVEAVISDNNRQKIGVVYRPSQSAPRALTEYAPGRVITIDKKEYLSAAVVANGGTTDAYRARALFDNPHRRPYVFCSEPSCCYVEDVGAGDGSFRKAVPCPLCSVGTLRVMEMISPEIYLPEGSAPIAKLDDEPDITRATPAQFPVPLHQSDTDLEEIGSLSGSMRIYRREQAELVVVNKGDPTEQLGFEVCRECGLSGVVGAGKVFFPHDTPFYVQERPAAMPARRRCRGTRENVFLGHRFSTDLSIIRANITSPLCQDPHGQNADFLALQSGLQTIAETLTLAAAKHFDVDYSEFSAGYRLIKQADDEVPLVAELYMFDTLSGGAGYSQQLADAFNVVLRHHAFEILKCSDADGTGCDRSCHKCLRHYHNQYYHAALDRRLAADLLKFLLDGAVIENPAPTQQKALLNGLAGMLSFDGIDVEFDGQVDGVSAPLIARGQYRDVAVYVTHGLIAPNRLSGLVDDLDGSTTAVCPLNEFFLTRNLPACFLEVKRCLGQ*