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berkeley_reactor_200306_planktonic_scaffold_151594

Search features with annotation key words

Displaying items 1-30 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_151594_1
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(3..1580)
DNA (1578bp) protein (526aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
Putative beta-galactosidase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0M6_CALAS
putative beta-galactosidase
berkeley_reactor_200306_planktonic_scaffold_151594_2
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(1809..3683)
DNA (1875bp) protein (625aa)
Autotransporter-associated beta strand repeat protein n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EM19_CORAD
autotransporter-associated beta strand repeat-containing protein
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:ADE55179.1}; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
berkeley_reactor_200306_planktonic_scaffold_151594_3
GWF2_Lentisphaerae_45_14_curated, Lentisphaerae, Bacteria

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comp(4198..5142)
DNA (945bp) protein (315aa)
Glycosidase, PH1107-related protein id=3052935 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
glycosidase
Tax=GWF2_Lentisphaerae_45_14_curated
berkeley_reactor_200306_planktonic_scaffold_151594_4
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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comp(5186..8533)
DNA (3348bp) protein (1116aa)
Uncharacterized protein id=4093765 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_151594_5
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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comp(8661..9242)
DNA (582bp) protein (194aa)
Uncharacterized protein id=4093765 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_151594_6
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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comp(9567..10544)
DNA (978bp) protein (326aa)
Putative uncharacterized protein id=3953176 bin=GWF2_Lentisphaerae_49_21 species=Paenibacillus curdlanolyticus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_151594_7
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(10565..13597)
DNA (3033bp) protein (1011aa)
Alpha-mannosidase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B0I3_9BACT
Alpha-mannosidase {ECO:0000313|EMBL:EIQ00775.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
alpha-mannosidase
berkeley_reactor_200306_planktonic_scaffold_151594_8
unknown

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comp(13622..14260)
DNA (639bp) protein (213aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(14253..17714)
DNA (3462bp) protein (1154aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYS3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20614.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(17722..18693)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYS2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20613.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(18695..19159)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYS1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20612.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_12
unknown

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comp(19161..19898)
DNA (738bp) protein (246aa)
prepilin-type N-terminal cleavage/methylation domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_151594_13
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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20019..21155
DNA (1137bp) protein (379aa)
Transcriptional regulator, GntR family with LacI sensor n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IWJ7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF93958.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_151594_14
unknown

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21437..22264
DNA (828bp) protein (276aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_15
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

22827..23558
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017465AE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF93764.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_151594_16
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(23732..25681)
DNA (1950bp) protein (650aa)
Na+/solute symporter n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IVH2_9BACT
sodium:proline symporter
Sodium:proline symporter {ECO:0000313|EMBL:AHF91564.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_151594_17
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(25681..27618)
DNA (1938bp) protein (646aa)
alpha-1,2-mannosidase n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003820989
Alpha-1,2-mannosidase
Alpha-1,2-mannosidase {ECO:0000313|EMBL:AIE86073.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_151594_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(27644..28501)
DNA (858bp) protein (286aa)
Alpha/beta hydrolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLU1_9BACT
Alpha/beta hydrolase {ECO:0000313|EMBL:EEF59198.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
endo-1,4-beta-xylanase
berkeley_reactor_200306_planktonic_scaffold_151594_19
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

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comp(28511..30166)
DNA (1656bp) protein (552aa)
id=24519191 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
berkeley_reactor_200306_planktonic_scaffold_151594_20
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(30387..33005)
DNA (2619bp) protein (873aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IRB4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF90873.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_151594_21
unknown

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comp(33025..33657)
DNA (633bp) protein (211aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_22
RBG_16_Armatimonadetes_58_9_curated, Armatimonadetes, Bacteria

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comp(33688..34386)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI000375652F
N-terminal cleavage protein
Tax=RBG_16_Armatimonadetes_58_9_curated
berkeley_reactor_200306_planktonic_scaffold_151594_23
unknown

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comp(34400..35077)
DNA (678bp) protein (226aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_24
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

35311..35976
DNA (666bp) protein (222aa)
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AIE85284.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Uncharacterized protein id=4315707 bin=GWF2_Planctomycete_41_51 species=Cronobacter sakazakii genus=Cronobacter taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
berkeley_reactor_200306_planktonic_scaffold_151594_25
unknown

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36281..36580
DNA (300bp) protein (100aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_26
unknown

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comp(36880..37452)
DNA (573bp) protein (191aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_27
unknown

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comp(37456..37635)
DNA (180bp) protein (60aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_28
unknown

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comp(37650..38105)
DNA (456bp) protein (152aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_29
unknown

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comp(38116..38292)
DNA (177bp) protein (59aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_30
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

38355..38621
DNA (267bp) protein (89aa)
Putative transcriptional regulator n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ANP4_9BACT
Putative transcriptional regulator {ECO:0000313|EMBL:EIP96635.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
DNA-binding protein
Displaying items 1-30 of 297 in total

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