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berkeley_reactor_200306_planktonic_scaffold_151594

Search features with annotation key words

Displaying items 121-150 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_151594_119
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(131052..131747)
DNA (696bp) protein (232aa)
Type II secretory pathway pseudopilin PulG-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLB6_9BACT
Type II secretory pathway pseudopilin PulG-like protein {ECO:0000313|EMBL:EEF59319.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
N-terminal cleavage protein
berkeley_reactor_200306_planktonic_scaffold_151594_120
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(131996..132964)
DNA (969bp) protein (323aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL0_9BACT
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
berkeley_reactor_200306_planktonic_scaffold_151594_121
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(132996..133568)
DNA (573bp) protein (191aa)
RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174489D
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpoE; RNA polymerase sigma factor
berkeley_reactor_200306_planktonic_scaffold_151594_122
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(133622..134905)
DNA (1284bp) protein (428aa)
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWU3_9BACT
glutamate-1-semialdehyde-2,1-aminomutase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_151594_123
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

135027..135407
DNA (381bp) protein (127aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB55_9BACT
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EDY16333.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
glyoxalase
berkeley_reactor_200306_planktonic_scaffold_151594_124
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

135433..135711
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB56_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16334.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_125
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

135716..135994
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB57_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16335.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_126
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(136274..138484)
DNA (2211bp) protein (737aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|SAAS:SAAS00085795}; EC=4.2.1.126 {ECO:0000256|SAAS:SAAS00085795};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Glucokinase regulatory-like protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB58_9BACT
N-acetylglucosamine kinase fused to sugar phosphate isomerase
berkeley_reactor_200306_planktonic_scaffold_151594_127
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

138726..140498
DNA (1773bp) protein (591aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ligA; NAD-dependent DNA ligase LigA (EC:6.5.1.2)
DNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGZ1_9BACT
berkeley_reactor_200306_planktonic_scaffold_151594_128
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

140533..141744
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI0003621AF4
acetylornithine and succinylornithine aminotransferase
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_151594_129
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

141812..142708
DNA (897bp) protein (299aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Ornithine carbamoyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW08_9BACT
ornithine carbamoyltransferase
berkeley_reactor_200306_planktonic_scaffold_151594_130
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

142744..144351
DNA (1608bp) protein (536aa)
Putative Sensor protein {ECO:0000313|EMBL:CBN55247.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CBN55247.1};; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
Putative Sensor protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8FY07_9CYAN
PAS/PAC sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_151594_131
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

144368..146131
DNA (1764bp) protein (588aa)
PAS/PAC domain protein n=1 Tax=Mariniradius saccharolyticus AK6 RepID=M7XBC1_9BACT
PAS/PAC domain protein {ECO:0000313|EMBL:EMS34730.1}; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
multi-sensor hybrid histidine kinase
berkeley_reactor_200306_planktonic_scaffold_151594_132
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

146268..148373
DNA (2106bp) protein (702aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVZ9_9BACT
hppA; membrane-bound proton-translocating pyrophosphatase
berkeley_reactor_200306_planktonic_scaffold_151594_133
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(148421..148771)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8R8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17126.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_134
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(148968..150596)
DNA (1629bp) protein (543aa)
symporter n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744899
SSS family solute/sodium (Na+) symporter
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:ABJ81924.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_151594_135
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(150636..151055)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744898
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ81923.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_151594_136
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(151081..152211)
DNA (1131bp) protein (377aa)
Alanine racemase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6I5_9BACT
alanine racemase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_151594_137
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(152243..153124)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI000373CAD7
3-methyladenine DNA glycosylase
3-methyladenine DNA glycosylase {ECO:0000313|EMBL:AKC83543.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_151594_138
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

153215..153613
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5Y1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18184.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_139
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

153610..153915
DNA (306bp) protein (102aa)
Tax=BJP_08E140C01_Bacteriodales_41_10
berkeley_reactor_200306_planktonic_scaffold_151594_140
unknown

Not on your lists

153927..154145
DNA (219bp) protein (73aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_141
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(154158..154448)
DNA (291bp) protein (97aa)
UPF0235 protein PTH_1821 id=4349103 bin=GWF2_Lentisphaerae_57_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
berkeley_reactor_200306_planktonic_scaffold_151594_142
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

154580..155971
DNA (1392bp) protein (464aa)
Divalent metal cation transporter MntH n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTL7_9BACT
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Mn2+/Fe2+ transporter
berkeley_reactor_200306_planktonic_scaffold_151594_143
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

155980..156408
DNA (429bp) protein (143aa)
Universal stress protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBW1_9BACT
UspA domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
berkeley_reactor_200306_planktonic_scaffold_151594_144
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

156458..156706
DNA (249bp) protein (83aa)
Prevent-host-death family protein n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G6L4_9GAMM
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:AHK78611.1}; TaxID=1354791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
berkeley_reactor_200306_planktonic_scaffold_151594_145
unknown

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comp(156805..157062)
DNA (258bp) protein (86aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_146
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(157197..158792)
DNA (1596bp) protein (532aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Schlesneria paludicola RepID=UPI00029A8000
PAS domain S-box protein {ECO:0000313|EMBL:KFC68299.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
sensory box protein
berkeley_reactor_200306_planktonic_scaffold_151594_147
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

159365..160603
DNA (1239bp) protein (413aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IQL7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94555.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_151594_148
unknown

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comp(160651..160800)
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying items 121-150 of 297 in total

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