ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_151594

Search features with annotation key words

Displaying items 271-297 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_151594_269

Not on your lists

comp(276952..277479)
DNA (528bp) protein (176aa)
Alkyl hydroperoxide reductase AhpD n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FDR0_STIAD
Marine sediment metagenome DNA, contig: S01H1_L01765 {ECO:0000313|EMBL:GAF84475.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
alkyl hydroperoxide reductase d
berkeley_reactor_200306_planktonic_scaffold_151594_270
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(277529..278056)
DNA (528bp) protein (176aa)
Alkyl hydroperoxide reductase C n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IQZ2_RHOCS
ahpC; alkyl hydroperoxide reductase C
Alkyl hydroperoxide reductase C {ECO:0000313|EMBL:ACI97878.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
berkeley_reactor_200306_planktonic_scaffold_151594_271
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

278257..278442
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZT8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20252.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_151594_272
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(278479..279231)
DNA (753bp) protein (251aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Type III pantothenate kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7X5_9BACT
Pantothenate kinase type III
berkeley_reactor_200306_planktonic_scaffold_151594_273
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(279266..280402)
DNA (1137bp) protein (379aa)
Twitching motility protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D003_9BACT
Twitching motility protein {ECO:0000313|EMBL:EDY20317.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
twitching motility protein
berkeley_reactor_200306_planktonic_scaffold_151594_274
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(280406..281488)
DNA (1083bp) protein (361aa)
Twitching motility protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D005_9BACT
Twitching motility protein {ECO:0000313|EMBL:EDY20319.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
twitching motility protein
berkeley_reactor_200306_planktonic_scaffold_151594_275
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(281605..281985)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D006_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20320.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_276
unknown

Not on your lists

comp(281982..282395)
DNA (414bp) protein (138aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_277
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(282414..282827)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D008_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_151594_278
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

282931..284010
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003787D2E
galactokinase
Tax=BJP_IG2158_Thermoplasmatales_53_16
berkeley_reactor_200306_planktonic_scaffold_151594_279
unknown

Not on your lists

comp(284017..284559)
DNA (543bp) protein (181aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_280
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

284725..285903
DNA (1179bp) protein (393aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
acetate kinase n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174510C
ackA-1; acetate kinase
berkeley_reactor_200306_planktonic_scaffold_151594_281
Gynuella sunshinyii, Gynuella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

285911..288004
DNA (2094bp) protein (698aa)
phosphotransacetylase (EC:2.3.1.8)
Phosphate acetyltransferase {ECO:0000256|PIRNR:PIRNR006107}; EC=2.3.1.8 {ECO:0000256|PIRNR:PIRNR006107, ECO:0000313|EMBL:AJQ94646.1};; Phosphotransacetylase {ECO:0000256|PIRNR:PIRNR006107}; TaxID=1445510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales; Gynuella.;" source="Gynuella sunshinyii YC6258.;"
phosphate acetyltransferase n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174510D
berkeley_reactor_200306_planktonic_scaffold_151594_282
unknown

Not on your lists

comp(288059..288802)
DNA (744bp) protein (248aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_283
unknown

Not on your lists

comp(288882..289694)
DNA (813bp) protein (271aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_284
RIFOXYA2_FULL_RIF01_40_8_curated, RIF1, Bacteria

Not on your lists

comp(289699..290577)
DNA (879bp) protein (293aa)
ABC transporter ATP-binding protein n=1 Tax=Zavarzinella formosa RepID=UPI0003177EE9
ABC transporter ATP binding protein
Tax=RIFOXYA2_FULL_RIF01_40_8_curated
berkeley_reactor_200306_planktonic_scaffold_151594_285
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(290574..290975)
DNA (402bp) protein (134aa)
Transcriptional regulator, GntR family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJV5_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEG76413.1}; TaxID=555088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
GntR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_151594_286
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

291095..291922
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4B4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18715.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_151594_287
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

291950..293200
DNA (1251bp) protein (417aa)
CinA-like protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZT4_9BACT
CinA-like protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
competence/damage-inducible protein CinA
berkeley_reactor_200306_planktonic_scaffold_151594_288
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(293178..294533)
DNA (1356bp) protein (452aa)
adenine permease n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017458E9
Permease {ECO:0000313|EMBL:EIQ00099.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
xanthine/uracil/vitamin C permease
berkeley_reactor_200306_planktonic_scaffold_151594_289
Leptospira kmetyi, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

294618..296777
DNA (2160bp) protein (720aa)
ammonium transporter (EC:2.7.13.3)
Ammonium transporter n=1 Tax=Leptospira kmetyi serovar Malaysia str. Bejo-Iso9 RepID=V6HLT1_9LEPT
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1049970 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira kmetyi serovar Malaysia str. Bejo-Iso9.;"
berkeley_reactor_200306_planktonic_scaffold_151594_290
unknown

Not on your lists

296774..297286
DNA (513bp) protein (171aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_291
Leptospira alexanderi, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

297283..297666
DNA (384bp) protein (128aa)
Uncharacterized protein n=18 Tax=Leptospira RepID=Q04ZA2_LEPBL
hypothetical protein
PF09345 domain protein {ECO:0000313|EMBL:EQA63264.1}; TaxID=1049759 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira alexanderi serovar Manhao 3 str. L 60.;"
berkeley_reactor_200306_planktonic_scaffold_151594_292
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

297721..298668
DNA (948bp) protein (316aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Two-component hybrid sensor and regulator n=1 Tax=Beggiatoa sp. PS RepID=A7BTK2_9GAMM
response regulator receiver protein
berkeley_reactor_200306_planktonic_scaffold_151594_293
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

298743..300806
DNA (2064bp) protein (688aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003720D9E
hypothetical protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_151594_294
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(300830..301630)
DNA (801bp) protein (267aa)
Metallophosphoesterase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4Z2_9BACT
Metallophosphoesterase {ECO:0000313|EMBL:EDY18595.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_151594_295
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

301964..302308
DNA (345bp) protein (115aa)
Transcription termination/antitermination protein nusG n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2H1_9BACT
nusG; transcriptional activator RfaH, NusG family
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
Displaying items 271-297 of 297 in total

View Taxonomy