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berkeley_reactor_200306_planktonic_scaffold_151594

Search features with annotation key words

Displaying items 151-180 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_151594_149
unknown

Not on your lists

160828..161442
DNA (615bp) protein (205aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_150
unknown

Not on your lists

161466..161849
DNA (384bp) protein (128aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_151
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(162467..163894)
DNA (1428bp) protein (476aa)
Aldehyde Dehydrogenase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7Y4_9BACT
Aldehyde Dehydrogenase {ECO:0000313|EMBL:EDY17507.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
aldehyde dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_151594_152
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163891..165105)
DNA (1215bp) protein (405aa)
saccharopine dehydrogenase (NAD+, L-lysine forming) (EC:1.5.1.7)
Saccharopine dehydrogenase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0D0_9BACT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
berkeley_reactor_200306_planktonic_scaffold_151594_153
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

165164..165745
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAW3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16435.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_151594_154
unknown

Not on your lists

165778..166380
DNA (603bp) protein (201aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_155
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(166401..167081)
DNA (681bp) protein (227aa)
Putative UDP-N-acetylglucosamine diphosphorylase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H8_9BACT
Putative UDP-N-acetylglucosamine diphosphorylase {ECO:0000313|EMBL:EDY18383.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
gcd1; nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunit
berkeley_reactor_200306_planktonic_scaffold_151594_156
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(167156..168550)
DNA (1395bp) protein (465aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
cysS; Cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H7_9BACT
berkeley_reactor_200306_planktonic_scaffold_151594_157
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(168547..169023)
DNA (477bp) protein (159aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H6_9BACT
berkeley_reactor_200306_planktonic_scaffold_151594_158
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(169025..169837)
DNA (813bp) protein (271aa)
inositol-phosphate phosphatase (EC:3.1.3.25)
Inositol-phosphate phosphatase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H5_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_151594_159
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(169929..170180)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002F66FD8
histone
Tax=GWA2_Gallionellales_60_18_curated
berkeley_reactor_200306_planktonic_scaffold_151594_160
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(170325..170882)
DNA (558bp) protein (186aa)
Phosphopantothenoylcysteine decarboxylase {ECO:0000313|EMBL:EEF60936.1}; EC=4.1.1.36 {ECO:0000313|EMBL:EEF60936.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phosphopantothenoylcysteine decarboxylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH15_9BACT
phosphopantothenate--cysteine ligase
berkeley_reactor_200306_planktonic_scaffold_151594_161
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(170879..171493)
DNA (615bp) protein (205aa)
Guanylate kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H3_9BACT
gmk; guanylate kinase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_151594_162
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(171486..172352)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18377.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_151594_163
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(172386..173231)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5I7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18392.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
membrane protein
berkeley_reactor_200306_planktonic_scaffold_151594_164
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(173228..174097)
DNA (870bp) protein (290aa)
ABC transporter-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5I6_9BACT
ABC transporter-related protein {ECO:0000313|EMBL:EDY18391.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
putative ABC transporter ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_151594_165
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(174102..174617)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5I3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18388.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_151594_166
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(174614..175165)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5I2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18387.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_151594_167
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(175215..177230)
DNA (2016bp) protein (672aa)
Surface antigen (D15) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4J9_9BACT
surface antigen (D15)
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
berkeley_reactor_200306_planktonic_scaffold_151594_168
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(177227..180700)
DNA (3474bp) protein (1158aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745342
Uncharacterized protein {ECO:0000313|EMBL:EDY18453.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_151594_169
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

180794..181753
DNA (960bp) protein (320aa)
Mammalian cell entry related domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7N9_9BACT
Mammalian cell entry related domain protein {ECO:0000313|EMBL:EDY17529.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_170
Leptospirillum ferrodiazotrophum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(181750..182235)
DNA (486bp) protein (162aa)
Phosphoglycerate mutase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYX3_9BACT
Phosphoglycerate mutase {ECO:0000313|EMBL:EES52159.1}; TaxID=412449 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferrodiazotrophum.;"
phosphoglycerate mutase
berkeley_reactor_200306_planktonic_scaffold_151594_171
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

182517..182777
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWJ7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21789.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_172

Not on your lists

182904..183371
DNA (468bp) protein (156aa)
fruA; fructose-specific PTS system, EIIABC component (EC:2.7.1.- 2.7.1.69)
Putative PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6N8_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48651.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
berkeley_reactor_200306_planktonic_scaffold_151594_173
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


183375..185087
DNA (1713bp) protein (571aa)
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Akkermansia muciniphila (strain ATCC BAA-835) RepID=B2UPU8_AKKM8
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_151594_174
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

185168..186487
DNA (1320bp) protein (440aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01981}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_01981};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01981};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_01981};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_01981}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
6-phosphofructokinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY52_9BACT
phosphofructokinase
berkeley_reactor_200306_planktonic_scaffold_151594_175
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(186573..187574)
DNA (1002bp) protein (334aa)
ldhA; D-lactate dehydrogenase (EC:1.1.1.28)
D-lactate dehydrogenase n=1 Tax=Rhodopirellula baltica WH47 RepID=F2ALW5_RHOBT
D-lactate dehydrogenase {ECO:0000313|EMBL:EGF29337.1}; TaxID=991778 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica WH47.;"
berkeley_reactor_200306_planktonic_scaffold_151594_176
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(187632..188099)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Halomonas smyrnensis RepID=UPI0002FD9A73
N-acetyltransferase GCN5
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
berkeley_reactor_200306_planktonic_scaffold_151594_177
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(188157..188810)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAJ9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16517.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_151594_178
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(188807..190906)
DNA (2100bp) protein (700aa)
Outer membrane efflux protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAJ8_9BACT
transporter
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
Displaying items 151-180 of 297 in total

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