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berkeley_reactor_200306_planktonic_scaffold_151594

Search features with annotation key words

Displaying items 61-90 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_151594_61
unknown

Not on your lists

comp(77079..77168)
DNA (90bp) protein (30aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_62
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(77322..78131)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017460E8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF89107.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_151594_63
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(78128..78628)
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=unclassified Opitutaceae RepID=I6AMY7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF89108.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_151594_64
unknown

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comp(78810..78989)
DNA (180bp) protein (60aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_65
unknown

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comp(78986..79828)
DNA (843bp) protein (281aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_66
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(81135..83039)
DNA (1905bp) protein (635aa)
primase, putative n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B6B
Phage/plasmid primase, P4 family, C-terminal domain {ECO:0000313|EMBL:EIQ01616.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
Hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_151594_67
unknown

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comp(83026..83292)
DNA (267bp) protein (89aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_68
unknown

Not on your lists

comp(84007..85086)
DNA (1080bp) protein (360aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_69
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(85097..86170)
DNA (1074bp) protein (358aa)
Integrase family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXW6_9BACT
Integrase family protein {ECO:0000313|EMBL:EDY21114.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
integrase
berkeley_reactor_200306_planktonic_scaffold_151594_trna_1
unknown

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86263..86335
DNA (73bp)
transferRNA Arg
berkeley_reactor_200306_planktonic_scaffold_151594_70
unknown

Not on your lists

comp(86366..86647)
DNA (282bp) protein (94aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_71
unknown

Not on your lists

86802..87122
DNA (321bp) protein (107aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_72
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(87185..87583)
DNA (399bp) protein (133aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVB3_9BACT
berkeley_reactor_200306_planktonic_scaffold_151594_73
Chlamydomonas reinhardtii, Chlamydomonas, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

Not on your lists

87827..89509
DNA (1683bp) protein (561aa)
Putative uncharacterized protein n=1 Tax=Volvox carteri RepID=D8U4N9_VOLCA
Plus agglutinin {ECO:0000313|EMBL:AAS07044.1}; TaxID=3055 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.;" source="Chlamydomonas reinhardtii (Chlamydomonas smithii).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_151594_74
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

89549..90181
DNA (633bp) protein (211aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP4_9BACT
tolQ; MotA/TolQ/ExbB proton channel family protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_151594_75
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

90178..90588
DNA (411bp) protein (137aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP3_9BACT
exbD; biopolymer transport protein ExbD/TolR
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_151594_76
unknown

Not on your lists

90585..91307
DNA (723bp) protein (241aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_77
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

91304..91543
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21483.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_78
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

91672..92919
DNA (1248bp) protein (416aa)
3-oxoacyl-ACP synthase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017460D6
3-oxoacyl-(acyl-carrier-protein) synthase 2
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_151594_79
unknown

Not on your lists

comp(93205..93621)
DNA (417bp) protein (139aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_80
unknown

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comp(93625..94047)
DNA (423bp) protein (141aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_151594_81
Syntrophothermus lipocalidus, Syntrophothermus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(94102..94302)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CLE0_SYNLT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI01525.1}; Flags: Precursor;; TaxID=643648 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophothermus.;" source="Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1).;"
berkeley_reactor_200306_planktonic_scaffold_151594_82
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(94342..94824)
DNA (483bp) protein (161aa)
NUDIX hydrolase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9Q9_9BACT
NUDIX hydrolase {ECO:0000313|EMBL:EDY16840.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
NUDIX hydrolase
berkeley_reactor_200306_planktonic_scaffold_151594_83
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

94885..95430
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9R1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16842.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_151594_84
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

95472..96914
DNA (1443bp) protein (481aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Amidophosphoribosyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVD3_9BACT
purF; glutamine phosphoribosylpyrophosphate amidotransferase
berkeley_reactor_200306_planktonic_scaffold_151594_85
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

96911..97933
DNA (1023bp) protein (341aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVD4_9BACT
berkeley_reactor_200306_planktonic_scaffold_151594_86
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(97993..100152)
DNA (2160bp) protein (720aa)
Endoglucanase {ECO:0000256|RuleBase:RU361166}; EC=3.2.1.4 {ECO:0000256|RuleBase:RU361166};; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
Glycosyl hydrolase family 9,cellulose-binding protein with CBM2 domain n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9EQW4_9CYAN
glycoside hydrolase family protein
berkeley_reactor_200306_planktonic_scaffold_151594_87
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(100182..101114)
DNA (933bp) protein (311aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
GDP-L-fucose synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X9_9BACT
NAD-dependent epimerase/dehydratase
berkeley_reactor_200306_planktonic_scaffold_151594_88
Dickeya dadantii, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101164..101562)
DNA (399bp) protein (133aa)
GCN5-related N-acetyltransferase n=1 Tax=Dickeya dadantii (strain Ech703) RepID=C6CB79_DICDC
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACS86607.1}; TaxID=579405 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya dadantii (strain Ech703).;"
berkeley_reactor_200306_planktonic_scaffold_151594_89
CG_Cyano_01, Cyanobacteria, Bacteria

Not on your lists

comp(101559..102488)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Anabaena sp. PCC 7108 RepID=UPI000349FB4B
LysR family transcriptional regulator
Tax=CG_Cyano_01
Displaying items 61-90 of 297 in total

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