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cn_combo_scaffold_5948_11

Organism: CN-SCN_Phenylobacterium_14x

near complete RP 44 / 55 MC: 2 BSCG 42 / 51 MC: 2 ASCG 7 / 38
Location: comp(7313..9250)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RH36_PHEZH similarity UNIREF
DB: UNIREF100
  • Identity: 90.2
  • Coverage: 645.0
  • Bit_score: 1111
  • Evalue 0.0
rpoD; RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 90.2
  • Coverage: 645.0
  • Bit_score: 1111
  • Evalue 0.0
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Ca similarity UNIPROT
DB: UniProtKB
  • Identity: 90.2
  • Coverage: 645.0
  • Bit_score: 1111
  • Evalue 0.0

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Taxonomy

Phenylobacterium zucineum → Phenylobacterium → Caulobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1938
ATGAGCACCAACACGGCTGAAGCGGAAACCACGGAAACGACCGGCGGCGACGGCCCGCTGCTCGACCTCACCGACGCCGGCGTAAAGAAGTTCATCAAGCAGGCGAAAGCCCGCGGCTACGTCACCATGGACGAGCTGAACAAGGTGCTGCCCTCGGAGGAAGTGACCTCCGAGGCCATCGAAGACACCTTGGCCATGCTCTCGGAGATGGGCGTCAACGTCGTCGAGGCCGAAGAGGACGCCGAGGGCGGCGAGGTCGCGGTCCGCGAGGAGACCGCGGTGGTCGAGACGGCCAAGGAGCCGGCCTACGACCGCACCGACGACCCGGTGCGCATGTACCTGCGCGAAATGGGCTCGGTGGAACTCTTGTCGCGCGAGGGCGAGATCGCCATCGCCAAGCGCATCGAGGCCGGCCGCGACACCATGATCCGCGGCCTGTGCGAAAGCGCCCTGACCTTCGAAGCCATCATGGTGTGGCGCGAGGAGCTGGGCTCGGGCCGTATCCTGCTACGCGAGGTCATCGACCTCGAACAGACCTATGGCGGCGCCAACGCCGCGGCCGCCGAGATGGGCGGCGGCGAGGCGGAGTCCGAAGAGGAAGAGACCACCGAGGACGGCGAAGCCGCGGCCAAGGCCGAGGGCGATGACGACGACGATTTCGACGACGGCGCCGGCCCGACCATCAGCGCCATGGAGGGTGAGCTGCGCGAAGGGGTCATGGCGACCCTGGACGCCATCGCCGCCGAATTCGACGCCTTCCGCGCCCTGCAGGAAAAGCTGGTCGGCAAGCGCCTGAAGGGCGAGGACCTCTCGGACGCCGACCGCAAGGCCTACACCACCGCCTCGCTGACCATCGTCCAGCATCTGAAGACGCTGAAGCTGAACAACAACCGCATCGAGGCCCTGGTCGAACAGCTCTATGCGATCAACAAGCGCCTGATGGGCCTGGAAGGGCGGCTGCTGCGCCTGGCCGACAGCTACGGCATTTCGCGCGGCGAGTTCCTGAAGGCCTATTTCGGCCAGGAGCTGTCGCCGAACTGGACCGACCAGGTGAAGCCGCTGGGCGTGCGCTGGACCAAGTTCGTCGAGAACGACGCCAGCCAGATCGGCGACATCCGCCAGGAGATCGCCGCCCTGGCCACCGAGACCGGCGTGCCGATCGACGACTATCGCCGCATCGTCCAGACGGTGCAGAAGGGCGAGCGCGAGGCGCGTCAGGCCAAGAAGGAAATGGTCGAGGCCAACCTGCGCCTGGTGATCTCGATCGCCAAGAAATACACGAACCGCGGCCTGCAATTCCTTGATCTCATTCAGGAAGGGAACATCGGCCTGATGAAGGCGGTCGACAAGTTCGAGTACCGCCGGGGCTATAAGTTCTCGACCTATGCGACCTGGTGGATTCGCCAGGCGATCACCCGCTCGATCGCCGACCAGGCGCGGACCATCCGTATCCCGGTGCACATGATCGAGACGATCAACAAGATCGTCCGCACCAGCCGCCAGATGCTGCACGAGATCGGCCGCGAGCCGACGCCGGAGGAACTGGCCGAAAAGCTGGCCAGGCCGCTGGAGAAGGTGCGCAAGGGCCTGAAGATCGCCAAGGAGCCGATCAGCCTCGAAACCCCGATCGGCGACGAGGAAGACAGCCACCTGGGCGACTTCATCGAGGACAAGAACGCGATCCTGCCGATCGATGCGGCGATCCAGTCCAACCTGCGCGAGACCACGACGCGGGTGCTGGCCTCGCTGACCCCGCGCGAGGAGCGGGTGCTGCGCATGCGCTTCGGCATCGGCATGAACACCGACCACACCCTGGAGGAGGTCGGCCAGCAGTTCAGCGTCACCCGCGAACGTATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTCAAGCACCCGAGCCGCTCGCGCAAGCTGCGCTCGTTCCTCGACAGCTAA
PROTEIN sequence
Length: 646
MSTNTAEAETTETTGGDGPLLDLTDAGVKKFIKQAKARGYVTMDELNKVLPSEEVTSEAIEDTLAMLSEMGVNVVEAEEDAEGGEVAVREETAVVETAKEPAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVWREELGSGRILLREVIDLEQTYGGANAAAAEMGGGEAESEEEETTEDGEAAAKAEGDDDDDFDDGAGPTISAMEGELREGVMATLDAIAAEFDAFRALQEKLVGKRLKGEDLSDADRKAYTTASLTIVQHLKTLKLNNNRIEALVEQLYAINKRLMGLEGRLLRLADSYGISRGEFLKAYFGQELSPNWTDQVKPLGVRWTKFVENDASQIGDIRQEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLARPLEKVRKGLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS*