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cn_combo_scaffold_2705_19

Organism: CN-SCN_Pseudonocardia_51x

partial RP 9 / 55 MC: 1 BSCG 8 / 51 MC: 1 ASCG 4 / 38
Location: 18305..19105

Top 3 Functional Annotations

Value Algorithm Source
Ribulose bisphosphate carboxylase large chain n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ77_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 75.1
  • Coverage: 273.0
  • Bit_score: 394
  • Evalue 8.10e-107
ribulose bisphosphate carboxylase large chain similarity KEGG
DB: KEGG
  • Identity: 75.1
  • Coverage: 273.0
  • Bit_score: 394
  • Evalue 2.30e-107
Ribulose bisphosphate carboxylase large chain {ECO:0000313|EMBL:AEA23927.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonoca similarity UNIPROT
DB: UniProtKB
  • Identity: 75.1
  • Coverage: 273.0
  • Bit_score: 394
  • Evalue 1.10e-106

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Notes

Probably not true RuBisCO, no conserved domains detected. Rose Kantor (4/23/14)

Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 801
ATGGTCGTGCGCATCGCCGGACTCCCCGTCCTCGGACCGTCCGACGTCCTCGCCGGTGCCCGCGCGGTCGCCGGCTGGACCGGGGACGCCGTCGGCATCGCCGGGGAGCTCCCCGAGCGGGCGGGCAGGCTCCTCGACGGCGCCGAGGCGCTCGTCGGACGCATCACCGGCATCGCCGACCGGGTCGACGGGCTGCTCGACCGGGTCGACGGCAGCGTCGACTCCGTGGACGCGCTGCTCGCCGAGGTCGGCGGGATCGTCGCCCGCACGTCCACGGTGGTCGCCACCGCGGAGAAGCTCGTCGCCACCGTCGGCGGGGTCGCGGCCGACGCCGAGACGGTCGTCCGGACCGCCGGCGGCGTCGCGACGGAGGCGGCGACTCTCGTCGGTGCGGCACAAGGGGTCGCCCGGCAGGCGGGCGAGGTGGTCGACGGCGCGGCGGTCGTCGCGCGGCGGGCCGACGTGATCGTCGGGTCCGCGGGGTCGACGTCCGACGCCGCCGCCGCCCTGCTCGCGACCTGGGAGCCCGTGTCGAAGCGCGCCGCACCGCTGGCGCGCAAGTTCGTGGAGGAGCTGTCGGAGGACGAGGTGCGCGCCGCGATCCGGCTCGTCGACCACCTGCCGCAGCTCACCGAGCACCTCGAGAACGACATCATGCCGATCCTGGCGACGCTCGACCGCGTCGGACCCGACGTCCACGAGCTGCTCGACGTCCTCAAGGAGGTCCGGCAGGCCATCCTCGGCATCCCCGGGTTCGCCTTCTTCCGCCGGCGCGGCGAGGAGAAGGTCGACGAGGACTGA
PROTEIN sequence
Length: 267
MVVRIAGLPVLGPSDVLAGARAVAGWTGDAVGIAGELPERAGRLLDGAEALVGRITGIADRVDGLLDRVDGSVDSVDALLAEVGGIVARTSTVVATAEKLVATVGGVAADAETVVRTAGGVATEAATLVGAAQGVARQAGEVVDGAAVVARRADVIVGSAGSTSDAAAALLATWEPVSKRAAPLARKFVEELSEDEVRAAIRLVDHLPQLTEHLENDIMPILATLDRVGPDVHELLDVLKEVRQAILGIPGFAFFRRRGEEKVDED*