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CN-SCN_Pseudonocardia_51x

CN-SCN_Pseudonocardia_dioxanivorans_72_52
In projects: CN-SCN

Consensus taxonomy: Pseudonocardia dioxanivorans  →  Pseudonocardia  →  Pseudonocardiales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 52.07 Longest contig: 137.81 Kbp Bin length: 5.47 Mbp GC content: 72.42 %
Contigs count: 408 Features count: 5682 rRNAs count: 0 tRNAs count: 37

Genome completeness

partial RP 9 / 55 MC: 1 BSCG 8 / 51 MC: 1 ASCG 4 / 38

Description

Partial 9

Displaying items 1-50 of 408 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_172 PSE51_1
Class: Actinobacteria (85.37%)
123 137809 bp 70.79 54.20 86.74
cn_combo_scaffold_269 PSE51_2
Species: Pseudonocardia dioxanivorans (63.03%)
119 119426 bp 72.25 53.92 89.61
cn_combo_scaffold_292 PSE51_3
Species: Pseudonocardia dioxanivorans (51.69%)
118 106520 bp 73.22 52.01 88.32
cn_combo_scaffold_438 PSE51_377
Class: Actinobacteria (75.76%)
99 104244 bp 71.13 53.93 88.86
cn_combo_scaffold_365 PSE51_4
Order: Pseudonocardiales (56.52%)
92 94926 bp 73.16 52.24 90.54
cn_combo_scaffold_1103 PSE51_8
Order: Pseudonocardiales (55.7%)
79 82451 bp 71.69 54.65 93.05
cn_combo_scaffold_568 PSE51_5
Species: Pseudonocardia dioxanivorans (50%)
78 71708 bp 71.69 54.10 83.30
cn_combo_scaffold_1279 PSE51_405 75 42470 bp 71.94 88.09 94.01
cn_combo_scaffold_429 PSE51_376a
Class: Actinobacteria (57.33%)
75 84891 bp 69.15 53.21 90.83
cn_combo_scaffold_737 PSE51_378
Class: Actinobacteria (80.28%)
71 75271 bp 70.52 55.01 92.27
cn_combo_scaffold_833 PSE51_6
Species: Pseudonocardia dioxanivorans (62.12%)
66 55493 bp 74.32 50.04 89.74
cn_combo_scaffold_820 PSE51_379
Class: Actinobacteria (56.45%)
62 58305 bp 72.88 58.65 88.00
cn_combo_scaffold_1584 PSE51_10
Class: Actinobacteria (71.43%)
56 50420 bp 72.48 53.14 85.69
cn_combo_scaffold_934 PSE51_7
Species: Pseudonocardia dioxanivorans (71.11%)
45 51529 bp 72.71 52.16 91.37
cn_combo_scaffold_4746 PSE51_88
Species: Pseudonocardia dioxanivorans (71.79%)
39 32672 bp 70.66 49.38 88.48
cn_combo_scaffold_1136 PSE51_9
Species: Pseudonocardia dioxanivorans (55.26%)
38 43045 bp 72.41 53.71 89.75
cn_combo_scaffold_2048 PSE51_16
Species: Pseudonocardia dioxanivorans (55.26%)
38 34965 bp 73.45 51.26 91.28
cn_combo_scaffold_2459 PSE51_26
Species: Pseudonocardia dioxanivorans (68.42%)
38 31923 bp 73.21 53.01 87.82
cn_combo_scaffold_3178 PSE51_39
Species: Pseudonocardia dioxanivorans (75.68%)
37 30736 bp 73.80 53.76 91.06
cn_combo_scaffold_2070 PSE51_406a
Class: Actinobacteria (69.44%)
36 26459 bp 64.34 46.38 84.25
Duplicated contig (different strain?). Carries SCN hydrolase. Rose Kantor (9/26/13)
cn_combo_scaffold_1839 PSE51_12
Species: Pseudonocardia dioxanivorans (86.11%)
36 35222 bp 73.30 51.36 95.99
cn_combo_scaffold_2403 PSE51_25
Species: Pseudonocardia dioxanivorans (94.12%)
34 38357 bp 73.27 52.10 91.23
cn_combo_scaffold_2159 PSE51_19
Species: Pseudonocardia dioxanivorans (70.97%)
31 33070 bp 73.83 51.81 92.53
cn_combo_scaffold_3014 PSE51_36
Species: Pseudonocardia dioxanivorans (90.32%)
31 28951 bp 73.08 54.64 94.51
cn_combo_scaffold_2646 PSE51_28
Species: Pseudonocardia dioxanivorans (70%)
30 21130 bp 72.00 53.92 89.68
cn_combo_scaffold_5491 PSE51_111
Species: Pseudonocardia dioxanivorans (60%)
30 25727 bp 73.43 49.66 92.73
cn_combo_scaffold_1559 PSE51_381
Class: Actinobacteria (75.86%)
29 34740 bp 69.39 56.26 76.27
cn_combo_scaffold_2116 PSE51_17
Species: Pseudonocardia dioxanivorans (58.62%)
29 25926 bp 73.48 53.24 89.37
cn_combo_scaffold_3401 PSE51_46
Species: Pseudonocardia dioxanivorans (65.52%)
29 27649 bp 71.46 52.80 89.88
cn_combo_scaffold_2017 PSE51_15
Species: Pseudonocardia dioxanivorans (89.29%)
28 36154 bp 72.55 54.41 93.52
cn_combo_scaffold_2906 PSE51_31
Species: Pseudonocardia dioxanivorans (57.14%)
28 19451 bp 74.61 52.41 93.06
cn_combo_scaffold_5691 PSE51_119
Genus: Mycobacterium (71.43%)
28 20275 bp 66.60 10.86 81.66
cn_combo_scaffold_6118 PSE51_134
Species: Pseudonocardia dioxanivorans (78.57%)
28 24766 bp 73.98 53.29 91.29
cn_combo_scaffold_1984 PSE51_14
Species: Pseudonocardia dioxanivorans (92.59%)
27 30020 bp 71.30 55.98 89.32
cn_combo_scaffold_2257 PSE51_22
Species: Pseudonocardia dioxanivorans (74.07%)
27 26039 bp 72.74 53.14 94.65
cn_combo_scaffold_2544 PSE51_27
Species: Pseudonocardia dioxanivorans (55.56%)
27 23092 bp 73.03 53.10 92.52
cn_combo_scaffold_2050 PSE51_382
Class: Actinobacteria (65.38%)
26 26717 bp 72.77 53.55 95.27
cn_combo_scaffold_1941 PSE51_13
Species: Pseudonocardia dioxanivorans (92.31%)
26 28049 bp 73.10 54.35 89.18
cn_combo_scaffold_3970 PSE51_59
Species: Pseudonocardia dioxanivorans (84%)
25 19661 bp 73.73 52.26 84.74
cn_combo_scaffold_4961 PSE51_91
Species: Pseudonocardia dioxanivorans (96%)
25 26197 bp 73.69 53.26 89.29
cn_combo_scaffold_2430 PSE51_383
Class: Actinobacteria (91.3%)
23 22641 bp 72.85 52.75 88.87
cn_combo_scaffold_3737 PSE51_385
Class: Actinobacteria (60.87%)
23 22103 bp 69.58 52.98 84.04
cn_combo_scaffold_2141 PSE51_18
Species: Pseudonocardia dioxanivorans (91.3%)
23 25566 bp 73.78 49.33 89.02
cn_combo_scaffold_2179 PSE51_20
Class: Actinobacteria (65.22%)
23 25051 bp 71.97 53.03 91.39
cn_combo_scaffold_5048 PSE51_94
Order: Pseudonocardiales (56.52%)
23 11662 bp 69.74 56.80 83.99
cn_combo_scaffold_5347 PSE51_103
Species: Pseudonocardia dioxanivorans (78.26%)
23 27924 bp 71.22 38.73 88.85
cn_combo_scaffold_3226 PSE51_406b
Class: Actinobacteria (81.82%)
22 21451 bp 69.73 69.52 81.83
cn_combo_scaffold_2252 PSE51_21
Species: Pseudonocardia dioxanivorans (90.91%)
22 24293 bp 74.28 48.99 93.58
cn_combo_scaffold_2366 PSE51_23
Order: Pseudonocardiales (50%)
22 23164 bp 73.34 51.92 90.30
cn_combo_scaffold_2909 PSE51_32
Species: Pseudonocardia dioxanivorans (77.27%)
22 31487 bp 73.84 52.25 90.05
Displaying items 1-50 of 408 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.