ggKbase home page

cn_combo_scaffold_2050

Alias: PSE51_382

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2050_1
unknown

Not on your lists

comp(1..108)
DNA (108bp) protein (36aa)

This feature has no annotations

cn_combo_scaffold_2050_2
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(210..623)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Rhodococcus imtechensis RKJ300 = JCM 13270 RepID=I0WNU8_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:AII11419.1}; TaxID=37919 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (Nocardia opaca).;"
hypothetical protein
cn_combo_scaffold_2050_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(664..1413)
DNA (750bp) protein (250aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AEA24787.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEA24787.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardia
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CZ83_PSEUX
cn_combo_scaffold_2050_4
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1600..2697
DNA (1098bp) protein (366aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:AEA24778.1}; EC=1.3.8.1 {ECO:0000313|EMBL:AEA24778.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardi
Butyryl-CoA dehydrogenase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CZ74_PSEUX
cn_combo_scaffold_2050_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2732..3514)
DNA (783bp) protein (261aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CZ73_PSEUX
enoyl-CoA hydratase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AEA24777.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivora
cn_combo_scaffold_2050_6
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3511..4269)
DNA (759bp) protein (253aa)
3-hydroxy-2-methylbutyryl-CoA dehydrogenase (EC:1.1.1.178)
3-hydroxy-2-methylbutyryl-CoA dehydrogenase {ECO:0000313|EMBL:AEA24776.1}; EC=1.1.1.178 {ECO:0000313|EMBL:AEA24776.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardi
3-hydroxy-2-methylbutyryl-CoA dehydrogenase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CZ72_PSEUX
cn_combo_scaffold_2050_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4290..5471)
DNA (1182bp) protein (394aa)
acetyl-CoA acetyltransferase (EC:2.3.1.16)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AEA24775.1}; EC=2.3.1.16 {ECO:0000313|EMBL:AEA24775.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonoc
Acetyl-CoA acetyltransferase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CZ71_PSEUX
cn_combo_scaffold_2050_8
Mycobacterium triplex, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5556..6677
DNA (1122bp) protein (374aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A407_THECD
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:CDO90205.1}; TaxID=47839 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacteri
acyl-CoA dehydrogenase domain-containing protein rbh
cn_combo_scaffold_2050_9
Mycobacterium triplex, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6674..7573
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Streptomyces rapamycinicus RepID=UPI0003831005
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:CDO90204.1}; TaxID=47839 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacteri
hypothetical protein
cn_combo_scaffold_2050_10
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7698..8462
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Frankia sp. BMG5.12 RepID=UPI000365F330
ABC transporter
ABC transporter {ECO:0000313|EMBL:AJF68513.1}; TaxID=362257 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces vietnamensis.;"
cn_combo_scaffold_2050_11
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8437..9156
DNA (720bp) protein (240aa)
Monosaccharide-transporting ATPase (Fragment) n=1 Tax=Frankia sp. CN3 RepID=G6HPX3_9ACTO
ABC transporter related protein {ECO:0000313|EMBL:EFC84142.1}; Flags: Precursor;; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
ABC transporter
cn_combo_scaffold_2050_12
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

9153..10007
DNA (855bp) protein (285aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IVN1_9BACT
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:AHF91666.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
cn_combo_scaffold_2050_13
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10009..10884
DNA (876bp) protein (292aa)
Inner-membrane translocator n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EL53_METSB
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KJS10827.1}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacte
inner-membrane translocator
cn_combo_scaffold_2050_14
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10939..12093
DNA (1155bp) protein (385aa)
ABC-type branched-chain amino acid transport systems, periplasmic component n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5CZV6_PELTS
LivK; ABC-type branched-chain amino acid transport systems, periplasmic component
ABC-type branched-chain amino acid transport systems, periplasmic component {ECO:0000313|EMBL:BAF60461.1}; TaxID=370438 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Peloto
cn_combo_scaffold_2050_15
Mycobacterium avium, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12163..13275
DNA (1113bp) protein (371aa)
NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family protein {ECO:0000313|EMBL:ETZ44707.1}; EC=1.1.99.36 {ECO:0000313|EMBL:ETZ44707.1};; TaxID=1335419 species="Bacteria; Actinobacteria; Corynebacter
alcohol dehydrogenase n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI00036CA254
alcohol dehydrogenase
cn_combo_scaffold_2050_16
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(13301..14074)
DNA (774bp) protein (258aa)
Transcriptional regulator, IclR family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZH0_CONWI
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ADB53808.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="C
cn_combo_scaffold_2050_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

14172..17642
DNA (3471bp) protein (1157aa)
2-oxoacid ferredoxin oxidoreductase; K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] Tax=GWC2_Rokubacteria_70_16_curated
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8)
2-oxoacid ferredoxin oxidoreductase id=3112899 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cn_combo_scaffold_2050_18
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17770..18903
DNA (1134bp) protein (378aa)
hydrolase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B7AA73
Amidohydrolase 2 {ECO:0000313|EMBL:EUB96431.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhi
hypothetical protein
cn_combo_scaffold_2050_19
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

18900..19682
DNA (783bp) protein (261aa)
5-oxopent-3-ene-125-tricarboxylate decarboxylase {ECO:0000313|EMBL:EHN09559.1}; EC=4.1.1.68 {ECO:0000313|EMBL:EHN09559.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrob
5-carboxymethyl-2-hydroxymuconatedelta-isomerase (EC:5.3.3.10)
5-oxopent-3-ene-125-tricarboxylate decarboxylase n=1 Tax=Patulibacter medicamentivorans RepID=H0E9T5_9ACTN
cn_combo_scaffold_2050_20
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19679..20761
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237A899
amidohydrolase
Amidohydrolase 2 {ECO:0000313|EMBL:AEA28415.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain AT
cn_combo_scaffold_2050_21
Frankia sp. CcI6, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20810..21964)
DNA (1155bp) protein (385aa)
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase {ECO:0000313|EMBL:ETA03385.1}; EC=1.1.2.3 {ECO:0000313|EMBL:ETA03385.1};; TaxID=1352929 species="Bacteria; Actinobacteria; Franki
UPI0003CFF0E3 related cluster n=1 Tax=unknown RepID=UPI0003CFF0E3
FMN-dependent alpha-hydroxy acid dehydrogenase rbh
cn_combo_scaffold_2050_22
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21973..22986)
DNA (1014bp) protein (338aa)
ferredoxin n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002628C56
phthalate 4,5-dioxygenase reductase subunit
Phthalate 4,5-dioxygenase reductase subunit {ECO:0000313|EMBL:AIJ24306.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsi
cn_combo_scaffold_2050_23
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23108..23557
DNA (450bp) protein (150aa)
Rieske (2Fe-2S) iron-sulfur domain-containing protein n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237A898
Uncharacterized protein {ECO:0000313|EMBL:CCE07543.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
cn_combo_scaffold_2050_24
Rhodococcus imtechensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23562..24668
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Rhodococcus imtechensis RKJ300 = JCM 13270 RepID=I0W691_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:EID71907.1}; TaxID=1165867 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus imtechensis RKJ300 = JCM 132
hypothetical protein
cn_combo_scaffold_2050_25
Rhodococcus aetherivorans, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24691..25881)
DNA (1191bp) protein (397aa)
Putative transcriptional regulator n=1 Tax=Rhodococcus sp. EsD8 RepID=N1MBB0_9NOCA
Diguanylate cyclase {ECO:0000313|EMBL:AKE91794.1}; TaxID=191292 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus aetherivorans.;"
transcriptional regulator
cn_combo_scaffold_2050_26
Rhodococcus sp. BCP1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26028..26717
DNA (690bp) protein (230aa)
FAD-dependent oxidoreductase n=2 Tax=Rhodococcus RepID=UPI00034A9B58
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KDE13420.1}; TaxID=931223 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. BCP1.;"
oxidoreductase
Displaying 26 items

View Taxonomy