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cn_combo_scaffold_5708_17

Organism: CN-SCN_Pseudonocardia_51x

partial RP 9 / 55 MC: 1 BSCG 8 / 51 MC: 1 ASCG 4 / 38
Location: comp(14352..14963)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D1Q9_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 80.0
  • Coverage: 180.0
  • Bit_score: 265
  • Evalue 4.30e-68
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 80.0
  • Coverage: 180.0
  • Bit_score: 265
  • Evalue 1.20e-68
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEA27969.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudono similarity UNIPROT
DB: UniProtKB
  • Identity: 80.0
  • Coverage: 180.0
  • Bit_score: 265
  • Evalue 6.00e-68

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Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 612
ATGTTCCGCCGGACCGCTCCCGCCGCGCCCGCCACGGCCGATCCCGTGACGGAGTGTGCGCTGGCCGCGGCCGGCGGCGACCGCGCGGCGCTCGACGAGTTCGTCCGCACCACGCGGGACGACGTCCGCAGGTTCCTCTGCCATCTCGCCGGCCCGGCCGAGGCCGACGACCTGCTGCAGGACACCTACCTGCGCGCCGTCCGCTCGTTGCCGCGCTTCACCGGCGAGGGTCCGGCGCGGGCGTGGCTGCTGGCGATCGCCCGCCGGGCCGCGGCCGACGCCGTCCGCACCGCCGTGCGCCGGCCCCGGACGTCGGGCGTCGACGACTGGGACGCCGTCGCGGCGCGCGGTGCGCGGGTGTCGGCCGCCGACGAGGCCGTGCTCGTGTCCGTACTGGTCGCGGCCCTGGAGCCCGACCGTCGCGACGCGTTCGTCCTCACCCAGGTGCTCGGCCTGGGCTATGCGGAGGCGGCGCAGGTGTGCGACTGCCCCGTCGGCACGATCCGGTCGCGGGTGGCCCGGGCGCGTGAGGACCTGGTCGCTGCGCTGGAGCCCGACCGCGGCCGGGACGGGCACTCGGGGCATGCGGATCGCGGTGGTCGGGCCGGGTGA
PROTEIN sequence
Length: 204
MFRRTAPAAPATADPVTECALAAAGGDRAALDEFVRTTRDDVRRFLCHLAGPAEADDLLQDTYLRAVRSLPRFTGEGPARAWLLAIARRAAADAVRTAVRRPRTSGVDDWDAVAARGARVSAADEAVLVSVLVAALEPDRRDAFVLTQVLGLGYAEAAQVCDCPVGTIRSRVARAREDLVAALEPDRGRDGHSGHADRGGRAG*