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A3-18-all-fractions_k255_6157022_29

Organism: A3-18-all-fractions_metab_conc_132

partial RP 24 / 55 MC: 2 BSCG 22 / 51 MC: 5 ASCG 10 / 38 MC: 1
Location: comp(25401..25991)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor id=7721048 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 64.8
  • Coverage: 196.0
  • Bit_score: 254
  • Evalue 5.60e-65
sigK; RNA polymerase sigma factor SigK similarity KEGG
DB: KEGG
  • Identity: 68.3
  • Coverage: 180.0
  • Bit_score: 253
  • Evalue 4.60e-65
Putative RNA polymerase sigma factor, ECF family {ECO:0000313|EMBL:CAN02592.1}; TaxID=443906 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.3
  • Coverage: 180.0
  • Bit_score: 253
  • Evalue 2.30e-64

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Taxonomy

Clavibacter michiganensis → Clavibacter → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 591
ATGCTGCCTGTCATGGACCCCGTCGACGACGCGCCTACGGGCACGCGTGAGTCGAACGAGGATCTGCTGGCGCGGGTCGCCGCCGGCGACAAGGTGGCCTTCGCGAAGCTCTACGACGCGACCGCGCCGCGGCTCTTCGGGCTCGCCAGGCGGCTGCTCATCGACGCTGCGCAGGCGGAGGAGGTCACCCAGGAGGTGTACCTCGAGATCTGGCAGACGGCCACCCGGTACCAGCCGACCCGGGGTTCCGCGATGGCGTGGATGCTCACGCTCGAGCACCGCCGCGCCGTCGACCGCATCCGCTCGGCGCAGTCGAGCCGCAACCGCGACACCCGGATCGGCATCCGCGACCTCGACCGGGAGTACGACGACGTCGCCGAGACCGTGGAGATCAAGATCGAGAGCGAACGGGTCCGGCTCGCGCTCGCCAAGCTCACCGAGCTGCAGCGCCAGGCCGTCACACTCGCGTACTTCAAGGGGTTGAGCCACTCCGAGGTGGCAGCGATGCTGCACGTGCCCGTCGGCACGGTGAAGACCCGGCTGCGGGACGGCATGATCCGGCTGCGAGACGAGATGGGGGTGACGACATGA
PROTEIN sequence
Length: 197
MLPVMDPVDDAPTGTRESNEDLLARVAAGDKVAFAKLYDATAPRLFGLARRLLIDAAQAEEVTQEVYLEIWQTATRYQPTRGSAMAWMLTLEHRRAVDRIRSAQSSRNRDTRIGIRDLDREYDDVAETVEIKIESERVRLALAKLTELQRQAVTLAYFKGLSHSEVAAMLHVPVGTVKTRLRDGMIRLRDEMGVTT*