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H1-18-all-fractions_k255_7668841_4

Organism: H1-18-all-fractions_conc_55

near complete RP 45 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 2
Location: 3271..3840

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 family protein n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=F2ZEX4_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 64.0
  • Coverage: 189.0
  • Bit_score: 260
  • Evalue 1.30e-66
RNA polymerase sigma-70 family protein {ECO:0000313|EMBL:EGI00964.1}; TaxID=563797 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas coronafaciens.;" source="Pseudomonas coronafaciens pv. oryzae str. 1_6.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.0
  • Coverage: 189.0
  • Bit_score: 260
  • Evalue 1.80e-66
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 65.1
  • Coverage: 189.0
  • Bit_score: 257
  • Evalue 1.80e-66

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Taxonomy

Pseudomonas coronafaciens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 570
TTGCCCGATCACACCGACCTATTGTTTGATTACGAAGCCGCCCTGGCTGGTTGCGCCGCCGGCGACCAGGGTGCGCTGCGCCGCCTGTACGAACAGGAGGGCGCGCGTCTGCTCGGCGTGGCGCAGCGCATCGTGCGCGACGCCGCACTGGCCGAGGACATCGTGCATGACGCCTTTTTAAAAGTGTGGACCCGCGCCGCCAGCTACGATCCCCTGCGGGGCGCGGCGCGCGGCTGGCTCTACACCATCACCCGCCACCTGGCCCTGAACGCCATGCGCGACACCGCCCGCGAAGTGACGGTCGACGACGATGCCGCCGCGGCCATCGATGCCGACGCCTCGATGGCGCAATGGTCCGACGCGGCCGACGCCTTTGCCTGGCAGGCCAGTCCGGGCCGCATCACCGACTGCCTGGGCCAACTGGAACCGGTGCGCCGCAACTGCCTGCTGCATGCGTATGTGGACGGCCTGTCGCACAGCGAAATCGCCATCAAGGTCGAGGCGCCGCTGGGCACCGTCAAGGCCTGGATCAAGCGCAGCCTGGTGGCCTTGAAAGGCTGTCTGTCATGA
PROTEIN sequence
Length: 190
LPDHTDLLFDYEAALAGCAAGDQGALRRLYEQEGARLLGVAQRIVRDAALAEDIVHDAFLKVWTRAASYDPLRGAARGWLYTITRHLALNAMRDTAREVTVDDDAAAAIDADASMAQWSDAADAFAWQASPGRITDCLGQLEPVRRNCLLHAYVDGLSHSEIAIKVEAPLGTVKAWIKRSLVALKGCLS*