ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

cn_combo_scaffold_2306_11

Organism: CN-SCN_Pseudonocardia_86x

partial RP 15 / 55 MC: 1 BSCG 14 / 51 MC: 2 ASCG 7 / 38 MC: 1
Location: comp(10852..11604)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, AraC family (Fragment) n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RED3_LEIAQ similarity UNIREF
DB: UNIREF100
  • Identity: 73.3
  • Coverage: 251.0
  • Bit_score: 364
  • Evalue 8.40e-98
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERK67221.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsoni similarity UNIPROT
DB: UniProtKB
  • Identity: 73.7
  • Coverage: 251.0
  • Bit_score: 365
  • Evalue 5.30e-98
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 69.6
  • Coverage: 250.0
  • Bit_score: 349
  • Evalue 1.00e-93
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Leifsonia aquatica → Leifsonia → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 753
GTGCGCCGCGACGGGATCGTGCCCGAGCACGCAGGCGCGCACGTCATCCTGGCCGAGTCCGAGACCTCGGCTCTCCCGCTCGAGTGGGAACCGCACTCGCACGCCATGCACGAGCTGGTGTGGGTGCGCGGCGGGACGCTGACGGCCCGCGTCGGGGACCGGGTGTTCACGGTCTCGGACGGATCGGGGCTGTGGATCCCGGTCGGCACGGCCCACGCGGGCCGGCTCACCGCGAACGTCGCCTTCCACGACGCGTTCTTCGCCCCCGACCGCACACCGGTCGCGTTCGACGAGCCGACGGCGATCGCGATGACGCCCGTCCTCGAGTCCCTGCTCAGCCACCTGGCTCGAGCGGACCTGGGCGACGCGGCCCGCGCACGGGCCGAGGTGGTGGTGTTCGACGTGCTGGAGCCCTCGGCGCGCCAGCTGGCGCTGCGGCTGCCCGGCGACGACCGGATCGACCCGATTGCGACCGCGCTGCTCGACGACCCCGCCGACGACCGGGCCCTCGACGAGTGGGCCCGGACGCTGGGGATCAGCGAGCGCACGATCACCCGCGCGTTCCGGGTCGCGACGGGGCTGTCGTTCGTGCAGTGGCGCCAGGTGCTGCGGGTGCACGCGGCGCTGACCCTGCTCTCCGAGGGCCACGACGTGCAGGCGACGTCCGCGCGGCTCGGGTACGCGCAGCCCAGCACGTTCATCGAGGCGTTCCGGCGGGTCATGGGCACCACGCCGGGCGCGTTCCGGGGCTGA
PROTEIN sequence
Length: 251
VRRDGIVPEHAGAHVILAESETSALPLEWEPHSHAMHELVWVRGGTLTARVGDRVFTVSDGSGLWIPVGTAHAGRLTANVAFHDAFFAPDRTPVAFDEPTAIAMTPVLESLLSHLARADLGDAARARAEVVVFDVLEPSARQLALRLPGDDRIDPIATALLDDPADDRALDEWARTLGISERTITRAFRVATGLSFVQWRQVLRVHAALTLLSEGHDVQATSARLGYAQPSTFIEAFRRVMGTTPGAFRG*