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CN-SCN_Pseudonocardia_86x

CN-SCN_Pseudonocardia_dioxanivorans_72_87
In projects: CN-SCN

Consensus taxonomy: Pseudonocardia dioxanivorans  →  Pseudonocardia  →  Pseudonocardiales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 86.84 Longest contig: 218.34 Kbp Bin length: 6.55 Mbp GC content: 72.03 %
Contigs count: 396 Features count: 6738 rRNAs count: 0 tRNAs count: 41

Genome completeness

partial RP 15 / 55 MC: 1 BSCG 14 / 51 MC: 2 ASCG 7 / 38 MC: 1

Description

Partial 14

Displaying items 1-50 of 396 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_53 PSE87_341a
Class: Actinobacteria (86.29%)
197 218343 bp 70.77 89.30 91.64
cn_combo_scaffold_130 PSE87_342a
Class: Actinobacteria (64.47%)
152 171626 bp 70.71 87.52 91.31
cn_combo_scaffold_181 PSE87_1
Species: Pseudonocardia dioxanivorans (52.41%)
145 150853 bp 71.67 91.64 91.88
cn_combo_scaffold_517 PSE87_347
Class: Actinobacteria (72.73%)
110 116616 bp 70.36 94.02 87.57
cn_combo_scaffold_344 PSE87_343a
Class: Actinobacteria (78.95%)
95 97431 bp 69.64 92.93 88.82
cn_combo_scaffold_392 PSE87_344
Class: Actinobacteria (75.27%)
93 90878 bp 72.09 89.04 90.99
cn_combo_scaffold_637 PSE87_348
Class: Actinobacteria (58.02%)
81 65416 bp 68.60 58.44 88.71
cn_combo_scaffold_418 PSE87_345
Class: Actinobacteria (64.1%)
78 85962 bp 68.21 91.59 93.29
cn_combo_scaffold_881 PSE87_3
Class: Actinobacteria (79.22%)
77 75368 bp 70.57 93.51 81.91
cn_combo_scaffold_1003 PSE87_4
Order: Pseudonocardiales (50%)
74 69268 bp 70.26 93.18 90.80
cn_combo_scaffold_616 PSE87_2
Class: Actinobacteria (73.24%)
71 66698 bp 71.68 88.85 90.30
cn_combo_scaffold_731 PSE87_349
Class: Actinobacteria (52.31%)
65 60364 bp 68.13 91.33 90.88
cn_combo_scaffold_2561 PSE87_23
Order: Pseudonocardiales (52.54%)
59 55036 bp 73.49 85.30 89.80
cn_combo_scaffold_987 PSE87_350
Class: Actinobacteria (79.63%)
54 49130 bp 68.03 88.75 81.43
Duplicated contig (similar to ACT75_33). Contains SCN hydrolase. Rose Kantor (9/26/13)
cn_combo_scaffold_2900 PSE87_28
Species: Pseudonocardia dioxanivorans (66.04%)
53 43112 bp 72.48 90.63 91.07
cn_combo_scaffold_2182 PSE87_16
Species: Pseudonocardia dioxanivorans (77.55%)
49 53463 bp 73.67 82.95 92.28
cn_combo_scaffold_1379 PSE87_6
Class: Actinobacteria (73.47%)
49 42775 bp 69.84 93.39 88.78
cn_combo_scaffold_1165 PSE87_352
Class: Actinobacteria (79.17%)
48 42330 bp 70.30 93.15 89.00
cn_combo_scaffold_1145 PSE87_5
Class: Actinobacteria (89.13%)
46 42745 bp 72.50 85.76 91.56
cn_combo_scaffold_2024 PSE87_10
Species: Pseudonocardia dioxanivorans (73.91%)
46 43243 bp 73.32 90.56 87.57
cn_combo_scaffold_1334 PSE87_357
Class: Actinobacteria (86.67%)
45 41724 bp 71.53 86.83 91.62
cn_combo_scaffold_1092 PSE87_351
Order: Pseudonocardiales (50%)
44 44911 bp 71.64 93.58 88.31
cn_combo_scaffold_4206 PSE87_61
Species: Pseudonocardia dioxanivorans (67.44%)
43 36648 bp 72.64 90.68 88.05
cn_combo_scaffold_2232 PSE87_17
Species: Pseudonocardia dioxanivorans (53.66%)
41 38673 bp 72.74 89.37 88.10
cn_combo_scaffold_1375 PSE87_358
Class: Actinobacteria (60.98%)
41 37280 bp 67.23 91.44 82.75
cn_combo_scaffold_1735 PSE87_362
Class: Actinobacteria (85.37%)
41 40554 bp 71.86 88.00 90.62
cn_combo_scaffold_1172 PSE87_353
Class: Actinobacteria (57.5%)
40 44088 bp 69.03 89.23 77.99
cn_combo_scaffold_1203 PSE87_354
Class: Actinobacteria (87.5%)
40 41338 bp 68.64 95.15 81.23
cn_combo_scaffold_4332 PSE87_65
Species: Pseudonocardia dioxanivorans (91.89%)
37 31223 bp 73.41 83.19 89.51
cn_combo_scaffold_471 PSE87_346
Order: Pseudonocardiales (50%)
36 82717 bp 74.68 87.46 96.94
cn_combo_scaffold_1267 PSE87_355
Class: Actinobacteria (77.78%)
36 40417 bp 66.05 83.19 79.11
cn_combo_scaffold_1318 PSE87_356
Class: Actinobacteria (72.22%)
36 38979 bp 65.61 86.65 79.70
cn_combo_scaffold_4428 PSE87_66
Class: Actinobacteria (72.22%)
36 28558 bp 73.62 86.03 87.28
cn_combo_scaffold_4492 PSE87_68
Class: Actinobacteria (97.22%)
36 31470 bp 73.06 84.53 93.71
cn_combo_scaffold_2306 PSE87_366
Class: Actinobacteria (83.33%)
36 41255 bp 73.30 89.96 89.34
cn_combo_scaffold_3165 PSE87_32
Species: Pseudonocardia dioxanivorans (62.86%)
35 35955 bp 71.96 90.84 91.41
cn_combo_scaffold_1517 PSE87_361
Order: Pseudonocardiales (60%)
35 34012 bp 72.02 88.57 96.12
cn_combo_scaffold_1993 PSE87_363
Class: Actinobacteria (77.14%)
35 32017 bp 71.17 90.51 85.20
cn_combo_scaffold_2109 PSE87_13
Species: Pseudonocardia dioxanivorans (68.57%)
35 35740 bp 72.81 88.42 92.98
cn_combo_scaffold_2355 PSE87_19
Species: Pseudonocardia dioxanivorans (79.41%)
34 35127 bp 73.46 84.29 89.73
cn_combo_scaffold_1619 PSE87_8
Species: Pseudonocardia dioxanivorans (60.61%)
33 32288 bp 70.50 84.80 90.89
cn_combo_scaffold_2021 PSE87_364
Class: Actinobacteria (83.87%)
31 27062 bp 67.40 71.23 80.74
cn_combo_scaffold_2487 PSE87_368 31 22182 bp 73.44 85.00 87.49
cn_combo_scaffold_2168 PSE87_14
Order: Pseudonocardiales (58.06%)
31 25204 bp 72.42 93.19 86.68
cn_combo_scaffold_2410 PSE87_20
Species: Pseudonocardia dioxanivorans (53.33%)
30 24446 bp 72.42 88.72 90.47
cn_combo_scaffold_4627 PSE87_70
Order: Pseudonocardiales (56.67%)
30 30578 bp 72.32 87.81 91.96
cn_combo_scaffold_1493 PSE87_360
Class: Actinobacteria (65.52%)
29 34357 bp 71.58 92.48 87.69
cn_combo_scaffold_2326 PSE87_367
Domain: Bacteria (51.72%)
29 23529 bp 66.59 65.03 86.98
cn_combo_scaffold_2629 PSE87_369
Class: Actinobacteria (58.62%)
29 24035 bp 71.58 90.15 94.37
cn_combo_scaffold_3438 PSE87_40
Species: Pseudonocardia dioxanivorans (71.43%)
28 23858 bp 72.18 88.89 85.48
Displaying items 1-50 of 396 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.