ggKbase home page

cn_combo_scaffold_1145

Alias: PSE87_5

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1145_1
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..351)
DNA (351bp) protein (117aa)
pyruvate dehydrogenase (EC:1.2.4.1)
Pyruvate dehydrogenase (Acetyl-transferring) {ECO:0000313|EMBL:AEA27112.1}; EC=1.2.4.1 {ECO:0000313|EMBL:AEA27112.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardia
Pyruvate dehydrogenase (Acetyl-transferring) n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN88_PSEUX
cn_combo_scaffold_1145_2
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

503..1084
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Nocardiopsis synnemataformans RepID=UPI00034AD692
Uncharacterized protein {ECO:0000313|EMBL:GAJ80479.1}; TaxID=1206724 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis NBRC 14402.;"
riboflavin biosynthesis protein
cn_combo_scaffold_1145_3
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1094..2326
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Amycolatopsis alba RepID=UPI0003617986
Uncharacterized protein {ECO:0000313|EMBL:KEI45740.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula
erythromycin esterase rbh
cn_combo_scaffold_1145_4
Streptomyces sp. SirexAA-E, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2252..2764)
DNA (513bp) protein (171aa)
aminocarboxymuconate-semialdehyde decarboxylase n=1 Tax=Kribbella catacumbae RepID=UPI00037CB570
amidohydrolase 2
Amidohydrolase 2 {ECO:0000313|EMBL:AEN11950.1}; TaxID=862751 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain SirexAA-E / ActE).
cn_combo_scaffold_1145_5
unknown

Not on your lists

2774..2962
DNA (189bp) protein (63aa)

This feature has no annotations

cn_combo_scaffold_1145_6
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2988..3998)
DNA (1011bp) protein (337aa)
alcohol dehydrogenase n=1 Tax=Streptomyces sp. 351MFTsu5.1 RepID=UPI00037855EC
Zn-dependent alcohol dehydrogenase {ECO:0000313|EMBL:EXG82646.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DS
dehydrogenase rbh
cn_combo_scaffold_1145_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3998..4471)
DNA (474bp) protein (158aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN89_PSEUX
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:AEA27113.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocard
cn_combo_scaffold_1145_8
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4557..5294
DNA (738bp) protein (246aa)
NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN90_PSEUX
coenzyme F420-dependent NADP oxidoreductase
NADP oxidoreductase coenzyme F420-dependent {ECO:0000313|EMBL:AEA27114.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocard
cn_combo_scaffold_1145_9
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5345..5851)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5Z0L0_NOCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD56031.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
cn_combo_scaffold_1145_10
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5886..6659)
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN95_PSEUX
enoyl-CoA hydratase rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AEA27119.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivora
cn_combo_scaffold_1145_11
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6699..7094
DNA (396bp) protein (132aa)
Molybdenum-pterin binding protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN96_PSEUX
molybdenum-pterin-binding protein
Molybdenum-pterin binding protein {ECO:0000313|EMBL:AEA27120.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxani
cn_combo_scaffold_1145_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7072..8082)
DNA (1011bp) protein (337aa)
aminocarboxymuconate-semialdehyde decarboxylase (EC:4.1.1.45)
Aminocarboxymuconate-semialdehyde decarboxylase {ECO:0000313|EMBL:AEA27121.1}; EC=4.1.1.45 {ECO:0000313|EMBL:AEA27121.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonoca
Aminocarboxymuconate-semialdehyde decarboxylase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN97_PSEUX
cn_combo_scaffold_1145_13
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8352..9395)
DNA (1044bp) protein (348aa)
NADP-dependent oxidoreductase domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CNA0_PSEUX
NADP-dependent oxidoreductase domain-containing protein
NADP-dependent oxidoreductase domain protein {ECO:0000313|EMBL:AEA27124.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocar
cn_combo_scaffold_1145_14
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9479..9760)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CNA1_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA27125.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_1145_15
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9954..10448
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CNA2_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA27126.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_1145_16
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10445..12418)
DNA (1974bp) protein (658aa)
DNA ligase D n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CNA3_PSEUX
DNA ligase D {ECO:0000313|EMBL:AEA27127.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 5
DNA ligase D
cn_combo_scaffold_1145_17
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12488..12931)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CNA4_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA27128.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_1145_18
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12942..13325)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CNA5_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA27129.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_1145_19
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13428..13631)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CNA6_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA27130.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_1145_20
unknown

Not on your lists

comp(13638..13844)
DNA (207bp) protein (69aa)

This feature has no annotations

cn_combo_scaffold_1145_21
Streptomyces pristinaespiralis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13841..14518)
DNA (678bp) protein (226aa)
DNA-binding response regulator n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5HIE8_STRPR
DNA-binding response regulator {ECO:0000313|EMBL:EDY66609.2}; TaxID=457429 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pristinaespirali
LuxR family transcriptional regulator
cn_combo_scaffold_1145_22
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(14579..14917)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Actinoplanes sp. N902-109 RepID=R4LMV2_9ACTO
hypothetical protein Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
hypothetical protein
cn_combo_scaffold_1145_23
Actinoplanes globisporus, Actinoplanes, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

15220..15615
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI0003685831
cn_combo_scaffold_1145_24
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15763..18546
DNA (2784bp) protein (928aa)
ATPase-like protein n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ASM3_STRRD
ATPase-like protein
ATPase-like protein {ECO:0000313|EMBL:ACZ88546.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (str
cn_combo_scaffold_1145_25
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18581..19165)
DNA (585bp) protein (195aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S489_GEOOG
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADB75079.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geod
cn_combo_scaffold_1145_26
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19239..21191)
DNA (1953bp) protein (651aa)
Phospholipase, patatin family n=1 Tax=Streptomyces ipomoeae 91-03 RepID=L1L4M3_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF69103.1}; TaxID=362257 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces vietnamensis.;"
cn_combo_scaffold_1145_27
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21188..22849)
DNA (1662bp) protein (554aa)
GMC oxidoreductase n=1 Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9T718_MICAI
GMC oxidoreductase
GMC oxidoreductase {ECO:0000313|EMBL:ADL46058.1}; TaxID=644283 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATC
cn_combo_scaffold_1145_28
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22996..23331)
DNA (336bp) protein (112aa)
Ferredoxin n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX23_BLASD
fdxA; Ferredoxin
Ferredoxin {ECO:0000313|EMBL:CCG03431.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
cn_combo_scaffold_1145_29
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23380..25065)
DNA (1686bp) protein (562aa)
Sulphate transporter n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CNA7_PSEUX
sulfate transporter
Sulphate transporter {ECO:0000313|EMBL:AEA27131.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strai
cn_combo_scaffold_1145_30
Streptomyces sp. PRh5, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25316..26800
DNA (1485bp) protein (495aa)
aldehyde dehydrogenase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEBC0
Aldehyde dehydrogenase {ECO:0000313|EMBL:EXU66180.1}; TaxID=1158056 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PRh5.;"
hypothetical protein
Displaying items 1-30 of 46 in total

View Taxonomy