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cn_combo_scaffold_4896_11

Organism: CN-SCN_Pseudonocardia_86x

partial RP 15 / 55 MC: 1 BSCG 14 / 51 MC: 2 ASCG 7 / 38 MC: 1
Location: comp(9369..9944)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D1Q9_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 79.0
  • Coverage: 186.0
  • Bit_score: 267
  • Evalue 8.20e-69
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 79.0
  • Coverage: 186.0
  • Bit_score: 267
  • Evalue 2.30e-69
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEA27969.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudono similarity UNIPROT
DB: UniProtKB
  • Identity: 79.0
  • Coverage: 186.0
  • Bit_score: 267
  • Evalue 1.10e-68

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Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 576
ATGCTCCGCCCGACCGCCCCCGCACCCCTCACGGCCGATCCCGTGACGGCGTGTGCGCTGGCCGCGGCCGGCGGCGACCGCGCGGCGCTCGACGAGTTCGTCCGCGCCACGCAGGACGACGTCCGCCGGTTCCTCTGCCATCTCGCGGGCCCGGCGGAGGCCGACGACCTGTTGCAGGACACCTACCTGCGGGCGGTCCGCTCGCTGCCGCGCTTCACCGGTGAGGGCCCGGCGCGGGCGTGGCTGCTCGCGATCGCCCGCCGGGCCGCCGCCGACGCAGTCCGGACCGCGGTGCGCCGACCCCGGGCGACGGGCGTCGACGACTGGAACGACGTCACGGCCCGCGGCGCGCGGGTGTCGGCCGCCGACGAGGCCGTTCTCGTGTCCGCGCTGGTCGCGGCGCTGGAGCCCGACCGTCGGGACGCGTTCGTCCTCACCCAGATGCTGGGCCTGGGCTACGCGGAGGCTGCGCAGGTCTGCGACTGCCCCGTCGGCACGATCCGGTCGCGGGTGGCCCGTGCGCGCGAGGACCTGGTCGCCGCCCTGGAGCAGGGCCGCGCTCGCGCATCGGGCTGA
PROTEIN sequence
Length: 192
MLRPTAPAPLTADPVTACALAAAGGDRAALDEFVRATQDDVRRFLCHLAGPAEADDLLQDTYLRAVRSLPRFTGEGPARAWLLAIARRAAADAVRTAVRRPRATGVDDWNDVTARGARVSAADEAVLVSALVAALEPDRRDAFVLTQMLGLGYAEAAQVCDCPVGTIRSRVARAREDLVAALEQGRARASG*