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cn_combo_scaffold_5888_8

Organism: CN-SCN_Pseudonocardia_86x

partial RP 15 / 55 MC: 1 BSCG 14 / 51 MC: 2 ASCG 7 / 38 MC: 1
Location: 6094..6921

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CY86_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 71.2
  • Coverage: 281.0
  • Bit_score: 394
  • Evalue 1.10e-106
SigB/F/G subfamily RNA polymerase sigma-28 subunit similarity KEGG
DB: KEGG
  • Identity: 70.8
  • Coverage: 281.0
  • Bit_score: 392
  • Evalue 8.90e-107
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivora similarity UNIPROT
DB: UniProtKB
  • Identity: 70.8
  • Coverage: 281.0
  • Bit_score: 392
  • Evalue 4.40e-106

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Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 828
GTGGCCACCATCGACGAGATCGCGCCGGTACCGCCCACCGATGACGTGTCCGAGCCCGCCAAGCCGCCGCCCAGCGAGTACGCGAGCCTGCTCGAGCCCATGAACCGGATGGTCGCGCTCGACCCATCCGACCCGGCGCGCCGGGTGCTGCGCGACCAGATCGTCGTCGCCCTCCTCCCGCTCGTGCGTCACCTCGCGCAACGCCATGCCGCGGGCCACCCCGCGGGCGTCGAGGAGCTGGTGCAGGTCGGCAGCGTCGGGCTGCTCGGCGCAGTCGACCGCTGGGACCCCGACCGTGCCGGCGGTGACCTCCTCGGCTACCTCGTGCCCTGCGTGCGCGGTGAGATGCTGCGCTGGTTCCGCGACCGCACCTGGGCGGCGCGGGTTCCGCGCCGGCTCAAGGACCTCAGCGTCGCCATCAACAGGGCGACCGGCCCGCTGTCACAGCAGCTCGGCCGGTCCCCGCGCCCCAGCGAGCTGGCCGCCCACCTCGGTGTCGACGTCGGTGAGGTCGTCGAGGCCCTCACCGCCAAGGCCGGACACCACGCCGACGCCCTCGACCCCGTCGATCCCGACACCGGAACCGGTGTGGGACAACGCCTCGGCGGGCTCGATGCCGAGCTGGGGCACGTCGAGAACCGGCACGCCCTGCGCCCGCTGCTCGACGCGCTGCCCGAGCGCGAGCGCACCATCCTGGTGCTGCGGTTCTTCAAGGACATGACGCAGACCCAGATCGCCGAGGAGGTCGGCATCTCCCAGATGCACGTTTCCCGACTGCTCACCCGGACCCTCGGGCAGCTGCGCAAAGGCTTGTCCGACAACAGCTGA
PROTEIN sequence
Length: 276
VATIDEIAPVPPTDDVSEPAKPPPSEYASLLEPMNRMVALDPSDPARRVLRDQIVVALLPLVRHLAQRHAAGHPAGVEELVQVGSVGLLGAVDRWDPDRAGGDLLGYLVPCVRGEMLRWFRDRTWAARVPRRLKDLSVAINRATGPLSQQLGRSPRPSELAAHLGVDVGEVVEALTAKAGHHADALDPVDPDTGTGVGQRLGGLDAELGHVENRHALRPLLDALPERERTILVLRFFKDMTQTQIAEEVGISQMHVSRLLTRTLGQLRKGLSDNS*