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cn_combo_scaffold_16912_6

Organism: CN-SCN_Pseudonocardia_86x

partial RP 15 / 55 MC: 1 BSCG 14 / 51 MC: 2 ASCG 7 / 38 MC: 1
Location: 5913..6635

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CZS7_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 85.3
  • Coverage: 197.0
  • Bit_score: 331
  • Evalue 9.90e-88
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 85.3
  • Coverage: 197.0
  • Bit_score: 331
  • Evalue 2.80e-88
  • rbh
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEA27753.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudono similarity UNIPROT
DB: UniProtKB
  • Identity: 85.3
  • Coverage: 197.0
  • Bit_score: 331
  • Evalue 1.40e-87

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Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 723
ATGCCGGTGCAGCGGCCGGGGGACACCCCGGCCCCGCAGCGCGGCGACACCGGTCCGGGACGCCCTGTCCCGGACGACACGAGCCGGCACCCCGGGGCCGACGCCCACCCGTCGACGCAGCGGGAGGAACCACACGTGACCGCAGCCGCCGAGCTCCTCGAGCCCGAAGAGGACGGCGAAGGCTCGTGGGCACTGGTGAAGGCGAGCCAGAACGGCGACACGGCGGCGTTCGGCCGCCTGTACGAGCGCTACCACGACGTCGTGTTCCGCTACATCGTGTACCGGATGGGTGACCGCGGGACCGCCGAGGACCTCACCCACGAGACGTTCCTGAGGGCCCTGCGCCGCATCAACTCCGTCACCTACCAGGGCCGCGACATCGGGGCCTGGTTCGTCACGATCGCCCGCAACCTCGTGTTCGACCAGGTCAAGTCGAGCCGCCACCGTCTCGAGTCGACGACCGACAACATCGTCGACATCGCGCCCCCCACCACCGAGGGCCCCGAGCAGCTCGTCCTCGAGGGCGCCGCCCGCGACGCACTGCTCCGCGCGATCGACATGCTCAACCCGGACCAGCGCGAGTGCATCGTGCTGCGCTTCCTCAACGGCCTCTCCGTCGCCGAGACCGCCGTGAAGATGGACCGCAACGAAGGTGCCGTGAAAGCCCTGCAGCACCGGGCCGTGAAACGGCTCGCGCAGCTGATGCCGGACGGTGTCCGATGA
PROTEIN sequence
Length: 241
MPVQRPGDTPAPQRGDTGPGRPVPDDTSRHPGADAHPSTQREEPHVTAAAELLEPEEDGEGSWALVKASQNGDTAAFGRLYERYHDVVFRYIVYRMGDRGTAEDLTHETFLRALRRINSVTYQGRDIGAWFVTIARNLVFDQVKSSRHRLESTTDNIVDIAPPTTEGPEQLVLEGAARDALLRAIDMLNPDQRECIVLRFLNGLSVAETAVKMDRNEGAVKALQHRAVKRLAQLMPDGVR*