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cn_combo_scaffold_6603_10

Organism: CN-SCN_Sphingobium_10x

partial RP 17 / 55 BSCG 15 / 51 ASCG 2 / 38 MC: 1
Location: comp(6112..7125)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKL7_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 95.3
  • Coverage: 300.0
  • Bit_score: 572
  • Evalue 2.10e-160
rpoH; RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 95.3
  • Coverage: 300.0
  • Bit_score: 572
  • Evalue 5.90e-161
  • rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteri similarity UNIPROT
DB: UniProtKB
  • Identity: 95.3
  • Coverage: 300.0
  • Bit_score: 572
  • Evalue 2.90e-160

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Taxonomy

Sphingobium sp. SYK-6 → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1014
ATGACATGCAGCAACTGTTCAGTCATCTTTGCGTATAACAAATCAAACAGAGTCGACGCGACGCGGTCCCCTCCCGCGATCGTGTTCTGGGAAAGGCCAAATTTCGTGAGCAATGGTAGCAATGTCCCCGCGACGATTCCGGCGCTTGGCGGCGATGCCAGTCTGAACCGCTATCTGTCGGAAATCCGCAAGTTCCCGGTGCTGAAGCCCGAGGAAGAATATATGCTCGCCAAGCGCTATCAGGAGCATGGCGATCCCGAGGCGGCGGCCCGGCTGGTCACGAGCCACCTGCGGCTCGTGGCGAAGATTGCCATGGGCTATCGCGGCTATGGCCTGCCGGTCGCGGAATTGATCAGCGAAGGCAATATCGGCCTCATGCAAGGCGTGAAGAAGTTCGAGCCGGATCGCGGCTTCCGCCTTGCGACCTATGCCATGTGGTGGATCCGCGCCTCGATCCAGGAGTTCATCCTGCGCTCGTGGAGTCTCGTGAAGATCGGCACGACCGCCGCGCAGAAGAAGCTGTTCTTCAACCTGCGGCGCATGAAGAACCAGATCGAGGCTTTCGAGGACGGCGATCTGCGCCCCGAGGACGTCACCAAGATCGCGACCGATCTCGGCGTGTCGGAAGAGGACGTCATCTCGATGAACCGCCGCATGGCGATGGGCGGCGACACGTCGCTCAACGTCTCGGTCAACGAGGACGGCGAGGGTCAGTGGCAGGACTGGCTGGCTGACGAGAACCCGTTGCAGGACGAGCGCATCGCCGATGCTCAGGAAAGCGGACTGCGCCACGACATGTTGCTTGCCGCCATGGATGACCTCAACGAGCGCGAGCGGCACATCCTGCAGGAGCGCCGCCTCGCCGAGGAGCCCAAGACGCTCGAGGAGCTGAGCCAGGTCTATGGCGTGTCGCGCGAGCGCGTGCGCCAGATCGAGGTGCGCGCCTTTGAGAAGCTGCAGCGCGCGATGATGCGGATCGCGGGTGACCGGCGGCTGATGCCGGTCGCCGGCTGA
PROTEIN sequence
Length: 338
MTCSNCSVIFAYNKSNRVDATRSPPAIVFWERPNFVSNGSNVPATIPALGGDASLNRYLSEIRKFPVLKPEEEYMLAKRYQEHGDPEAAARLVTSHLRLVAKIAMGYRGYGLPVAELISEGNIGLMQGVKKFEPDRGFRLATYAMWWIRASIQEFILRSWSLVKIGTTAAQKKLFFNLRRMKNQIEAFEDGDLRPEDVTKIATDLGVSEEDVISMNRRMAMGGDTSLNVSVNEDGEGQWQDWLADENPLQDERIADAQESGLRHDMLLAAMDDLNERERHILQERRLAEEPKTLEELSQVYGVSRERVRQIEVRAFEKLQRAMMRIAGDRRLMPVAG*