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cn_combo_scaffold_6603_11

Organism: CN-SCN_Sphingobium_10x

partial RP 17 / 55 BSCG 15 / 51 ASCG 2 / 38 MC: 1
Location: comp(7088..7987)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomona similarity UNIPROT
DB: UniProtKB
  • Identity: 86.0
  • Coverage: 299.0
  • Bit_score: 521
  • Evalue 6.90e-145
Pseudouridine synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKL6_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 85.6
  • Coverage: 299.0
  • Bit_score: 520
  • Evalue 1.10e-144
rluD; ribosomal large subunit pseudouridine synthase D similarity KEGG
DB: KEGG
  • Identity: 86.0
  • Coverage: 299.0
  • Bit_score: 521
  • Evalue 1.40e-145

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Taxonomy

Sphingobium sp. SYK-6 → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 900
GTGCGGCTGGATCGTGCCCTTGCGGCGCTGGTGCCGGAGTTATCGCGCGAGCGGGTGAAGGCCCTGATTCTCGCCGGGCATGTGATGGGTCCGGGCGGCAAGCCGGCAAGCGATCCGGCGCTCAAGGTCTCGGCGCAAACGGCCTTCGCCCTCGCCATTCCGCAAGCGGCACCGGCGGAAGCTGTGGCCCAGCGGATCGACCTCGTCATTCCCTATGAGGACGATCATCTCATCGTGATCGACAAGGCGCCGGGCATGGTCGTGCATCCGGCGGCCGGCAATCCGGACGGGACGCTGGTCAATGCGCTGCTGCATCATTGCGCCGGCCAGCTTTCCGGCATTGGCGGGGTCGCCCGACCCGGCATCGTCCATCGGATCGACAAGGATACCTCGGGCCTGCTGGTGGTCGCCAAGACCGATCAGGCGCATGAGGGCCTCGCCCGGCAGTTCAAGGATCACAGCATCGACCGGCGCTATCTTGCCATCGTGAGTGGGCGTCCCGCGCCCCCGTCCGGCACGGTGAACCAGTGGATCGGCCGGTCGGATGCAGACCGCAAGAAAATGGCTGTCCAGCGCGAGGGGCGCGGCAAACATGCCGTTACCCACTATCGCACGCTCCAGCCGCTTGATCGCGCCGCGCTCGTCGAATGTCGCCTCGAAACCGGGCGGACGCATCAGGTGCGCGTCCACATGGCGCATATCGGCCATCCGCTGCTCGGCGATCCCGTCTACGGGCGCGGCGGTCCTCACAAATCCTTGCTGGCGGAGCTGGGCTTCCGTCGGCAAGCGCTCCACGCGGCAAAGCTGGGTTTCATCCATCCCGTCACAAGCCAGGCTCTCAGCTTTGAAAGCCCGATTGCGGATGACATGCAGCAACTGTTCAGTCATCTTTGCGTATAA
PROTEIN sequence
Length: 300
VRLDRALAALVPELSRERVKALILAGHVMGPGGKPASDPALKVSAQTAFALAIPQAAPAEAVAQRIDLVIPYEDDHLIVIDKAPGMVVHPAAGNPDGTLVNALLHHCAGQLSGIGGVARPGIVHRIDKDTSGLLVVAKTDQAHEGLARQFKDHSIDRRYLAIVSGRPAPPSGTVNQWIGRSDADRKKMAVQREGRGKHAVTHYRTLQPLDRAALVECRLETGRTHQVRVHMAHIGHPLLGDPVYGRGGPHKSLLAELGFRRQALHAAKLGFIHPVTSQALSFESPIADDMQQLFSHLCV*