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L2_039_239G1_public_UNK

In projects: L2_039_239G1_public

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 47.59 Longest contig: 513.27 Kbp Bin length: 98.29 Mbp GC content: 49.26 %
Contigs count: 20920 Features count: 109566 rRNAs count: 20 tRNAs count: 1633

Genome completeness

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17
Displaying items 20451-20500 of 20920 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
L2_039_239G1_scaffold_7570
Species: Klebsiella pneumoniae (100%)
2 2122 bp 56.27 5.02 100.52
L2_039_239G1_scaffold_17315
Species: Bifidobacterium scardovii (50%)
2 1155 bp 71.34 6.10 100.52
L2_039_239G1_scaffold_26694 2 1346 bp 60.03 51.71 100.52
L2_039_239G1_scaffold_5561
Genus: Veillonella (100%)
3 2689 bp 49.09 5.36 100.52
L2_039_239G1_scaffold_14244
Species: Veillonella dispar (50%)
2 1337 bp 50.34 5.16 100.52
L2_039_239G1_scaffold_14250
Species: Klebsiella pneumoniae (100%)
2 1337 bp 66.34 4.38 100.52
L2_039_239G1_scaffold_8897
Species: Veillonella dispar (50%)
2 1883 bp 41.48 9.00 100.53
L2_039_239G1_scaffold_8898
Species: Veillonella sp. AS16 (50%)
2 1883 bp 48.91 4.14 100.53
L2_039_239G1_scaffold_14624
Species: Roseburia hominis (100%)
2 1313 bp 52.48 2.97 100.53
L2_039_239G1_scaffold_17862
Species: Eggerthella sp. HGA1 (50%)
2 1125 bp 72.00 5.73 100.53
L2_039_239G1_scaffold_14658
Species: Veillonella sp. DORA_A_3_16_22 (50%)
2 1310 bp 40.46 6.76 100.53
L2_039_239G1_scaffold_17920
Species: Streptococcus parasanguinis (100%)
2 1122 bp 34.05 3.34 100.54
L2_039_239G1_scaffold_18000
Species: [Ruminococcus] gnavus (50%)
2 1119 bp 48.61 3.62 100.54
L2_039_239G1_scaffold_7922
Order: Clostridiales (66.67%)
3 2050 bp 63.41 5.27 100.54
L2_039_239G1_scaffold_26073
Species: Gordonibacter pamelaeae (50%)
2 1486 bp 46.50 4.54 100.54
L2_039_239G1_scaffold_14945
Species: Coprococcus catus (50%)
2 1292 bp 71.36 4.88 100.54
L2_039_239G1_scaffold_6439
Species: Marvinbryantia formatexigens (100%)
2 2399 bp 43.73 4.88 100.54
L2_039_239G1_scaffold_18575
Species: Klebsiella pneumoniae (100%)
2 1092 bp 59.07 5.63 100.55
L2_039_239G1_scaffold_5539
Species: Anaerostipes caccae (66.67%)
3 2703 bp 50.98 5.88 100.55
L2_039_239G1_scaffold_9548
Species: Coprobacillus sp. 8_2_54BFAA (66.67%)
3 1793 bp 33.30 5.27 100.56
L2_039_239G1_scaffold_19023
Species: Holdemanella biformis (100%)
2 1071 bp 36.32 4.34 100.56
L2_039_239G1_scaffold_19169
Species: Streptococcus sp. C300 (100%)
2 1065 bp 26.85 2.25 100.56
L2_039_239G1_scaffold_9719
Species: Eggerthella sp. HGA1 (66.67%)
3 1769 bp 66.76 5.51 100.57
L2_039_239G1_scaffold_9844
Species: Blautia sp. KLE 1732 (100%)
2 1754 bp 46.07 3.25 100.57
L2_039_239G1_scaffold_6250
Order: Clostridiales (75%)
4 2455 bp 69.45 9.10 100.57
L2_039_239G1_scaffold_13401
Species: Peptoclostridium difficile (50%)
2 1399 bp 71.12 5.15 100.57
L2_039_239G1_scaffold_16068
Species: Eggerthella lenta (100%)
3 1223 bp 67.38 4.66 100.57
L2_039_239G1_scaffold_11453
Genus: Veillonella (100%)
3 1569 bp 39.07 4.02 100.57
L2_039_239G1_scaffold_16134
Species: Eggerthella lenta (100%)
2 1220 bp 73.85 3.20 100.57
L2_039_239G1_scaffold_16138
Order: Eggerthellales (50%)
4 1220 bp 69.51 6.76 100.57
L2_039_239G1_scaffold_8730
Order: Clostridiales (100%)
5 1909 bp 46.52 3.54 100.58
L2_039_239G1_scaffold_8755
Species: Veillonella sp. ACP1 (50%)
2 1906 bp 45.59 12.12 100.58
L2_039_239G1_scaffold_19864
Species: Firmicutes bacterium CAG:227 (50%)
2 1035 bp 50.05 3.48 100.58
L2_039_239G1_scaffold_19888
Species: Eubacterium dolichum CAG:375 (100%)
2 1035 bp 33.24 4.06 100.58
L2_039_239G1_scaffold_12078
Species: Erysipelatoclostridium ramosum (50%)
4 2932 bp 31.65 5.27 100.58
L2_039_239G1_scaffold_13706
Species: Eubacterium dolichum CAG:375 (50%)
2 1375 bp 34.69 4.04 100.58
L2_039_239G1_scaffold_20280
Species: Escherichia coli (100%)
2 1020 bp 51.57 3.38 100.59
L2_039_239G1_scaffold_11869
Species: Bifidobacterium scardovii (100%)
2 1527 bp 69.35 4.13 100.59
L2_039_239G1_scaffold_13952
Species: Eubacterium dolichum CAG:375 (100%)
2 1357 bp 40.24 4.20 100.59
L2_039_239G1_scaffold_7213
Species: Rothia mucilaginosa (100%)
2 2204 bp 66.97 4.90 100.59
L2_039_239G1_scaffold_16764
Species: Roseburia hominis (100%)
2 1184 bp 43.33 2.79 100.59
L2_039_239G1_scaffold_11923
Species: Clostridium sp. CAG:169 (100%)
2 1521 bp 57.79 3.35 100.59
L2_039_239G1_scaffold_11924
Species: [Eubacterium] dolichum (50%)
2 1521 bp 42.01 3.75 100.59
L2_039_239G1_scaffold_20506
Species: Eubacterium dolichum CAG:375 (100%)
2 1011 bp 31.95 2.97 100.59
L2_039_239G1_scaffold_8045
Species: Ruminococcaceae bacterium D16 (100%)
2 2022 bp 66.72 5.64 100.59
L2_039_239G1_scaffold_14088
Species: Ruminococcus gnavus CAG:126 (100%)
2 1348 bp 46.59 5.12 100.59
L2_039_239G1_scaffold_10541 3 1667 bp 59.93 10.89 100.60
L2_039_239G1_scaffold_14305
Species: Veillonella sp. HPA0037 (50%)
2 1333 bp 39.76 5.63 100.60
L2_039_239G1_scaffold_17148
Species: Clostridium saccharoperbutylacetonicum (100%)
2 1163 bp 33.36 4.26 100.60
L2_039_239G1_scaffold_17201
Species: Clostridium sp. CAG:352 (50%)
2 1160 bp 38.02 3.88 100.60
Displaying items 20451-20500 of 20920 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.