ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 59.42 Longest contig: 324.93 Kbp Bin length: 119.54 Mbp GC content: 50.41 %

Contigs count: 23185 Features count: 128146 rRNAs count: 24 tRNAs count: 1816

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 19 / 38 MC: 17

Displaying items 401-450 of 23185 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L3_069_242G1_scaffold_12168 Species: Ruminococcus gnavus CAG:126 (50%)	2	1891 bp	45.27	4.12	100.58
L3_069_242G1_scaffold_5700 Species: Ruminococcaceae bacterium 585-1 (60%)	5	4131 bp	70.83	5.12	100.58
L3_069_242G1_scaffold_11146 Species: Klebsiella oxytoca (100%)	2	2073 bp	62.86	4.12	100.58
L3_069_242G1_scaffold_5217 Species: Klebsiella oxytoca (60%)	5	4513 bp	60.76	11.20	100.58
L3_069_242G1_scaffold_16488 Species: Enterobacter cloacae (100%)	2	1390 bp	63.74	52.01	100.58
L3_069_242G1_scaffold_16500 Species: Bilophila sp. 4_1_30 (50%)	2	1390 bp	63.17	4.53	100.58
L3_069_242G1_scaffold_11965 Species: Streptococcus vestibularis (100%)	2	1921 bp	39.88	5.54	100.57
L3_069_242G1_scaffold_18781 Species: Enterobacter hormaechei (50%)	2	1226 bp	58.89	53.96	100.57
L3_069_242G1_scaffold_21872 Species: Eubacterium hallii CAG:12 (66.67%)	3	1062 bp	40.77	3.25	100.57
L3_069_242G1_scaffold_7347 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (100%)	2	3195 bp	49.48	6.01	100.56
L3_069_242G1_scaffold_4903 Species: Enterobacter sp. R4-368 (50%)	4	4824 bp	53.90	5.57	100.56
L3_069_242G1_scaffold_12852 Species: [Eubacterium] hallii (100%)	2	1787 bp	38.11	4.53	100.56
L3_069_242G1_scaffold_10767 Species: Subdoligranulum sp. 4_3_54A2FAA (100%)	3	2148 bp	60.29	5.87	100.56
L3_069_242G1_scaffold_21556 Species: Klebsiella variicola CAG:634 (50%)	2	1077 bp	61.93	88.58	100.56
L3_069_242G1_scaffold_21559 Species: Klebsiella pneumoniae (100%)	2	1077 bp	62.58	35.24	100.56
L3_069_242G1_scaffold_9426 Species: Parabacteroides sp. 20_3 (66.67%)	6	3064 bp	54.37	227.94	100.55
L3_069_242G1_scaffold_11605 Species: Lelliottia amnigena (100%)	2	1984 bp	62.85	10.74	100.55
L3_069_242G1_scaffold_15779 Species: Bilophila wadsworthia (50%)	2	1450 bp	60.69	5.28	100.55
L3_069_242G1_scaffold_21108 Genus: Enterobacter (100%)	3	1098 bp	58.38	9.97	100.55
L3_069_242G1_scaffold_7082 Species: Subdoligranulum sp. 4_3_54A2FAA (75%)	4	3306 bp	49.88	4.22	100.54
L3_069_242G1_scaffold_13832 Species: Coprobacillus sp. 29_1 (100%)	3	1659 bp	35.44	3.89	100.54
L3_069_242G1_scaffold_15358 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (100%)	2	1489 bp	43.59	4.63	100.54
L3_069_242G1_scaffold_17609 Species: [Clostridium] bolteae (100%)	2	1304 bp	50.31	3.34	100.54
L3_069_242G1_scaffold_11261 Species: Lachnospiraceae bacterium 9_1_43BFAA (50%)	2	2050 bp	42.05	4.83	100.54
L3_069_242G1_scaffold_15250 Species: Streptococcus vestibularis (100%)	2	1498 bp	38.18	5.81	100.53
L3_069_242G1_scaffold_4987 Species: Enterobacter cloacae (50%)	12	6944 bp	55.33	70.42	100.53
L3_069_242G1_scaffold_11171 Species: Subdoligranulum sp. 4_3_54A2FAA (66.67%)	3	2068 bp	59.38	11.03	100.53
L3_069_242G1_scaffold_17412 Species: Streptococcus thermophilus (50%)	2	1316 bp	39.13	3.76	100.53
L3_069_242G1_scaffold_20451 Species: Lelliottia amnigena (50%)	2	1131 bp	57.74	7.16	100.53
L3_069_242G1_scaffold_14968 Species: Veillonella atypica (66.67%)	3	1525 bp	38.49	5.21	100.52
L3_069_242G1_scaffold_13398 Species: Bilophila wadsworthia (100%)	2	1716 bp	65.27	5.16	100.52
L3_069_242G1_scaffold_14777 Species: [Clostridium] clostridioforme (50%)	2	1546 bp	52.39	3.69	100.52
L3_069_242G1_scaffold_8058 Species: [Eubacterium] hallii (50%)	2	2901 bp	38.68	4.24	100.52
L3_069_242G1_scaffold_13171 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (100%)	3	1743 bp	52.78	6.63	100.52
L3_069_242G1_scaffold_11818 Species: Coprobacillus sp. 29_1 (66.67%)	3	1946 bp	31.60	3.55	100.51
L3_069_242G1_scaffold_19715 Species: Veillonella sp. ICM51a (100%)	2	1173 bp	44.08	2.30	100.51
L3_069_242G1_scaffold_13033 Species: Streptococcus vestibularis (100%)	2	1761 bp	39.24	5.03	100.51
L3_069_242G1_scaffold_16659	3	1376 bp	53.85	3.71	100.51
L3_069_242G1_scaffold_19205 Species: Slackia piriformis (100%)	2	1200 bp	58.67	2.25	100.50
L3_069_242G1_scaffold_16321 Species: [Clostridium] bolteae (100%)	2	1403 bp	54.10	4.70	100.50
L3_069_242G1_scaffold_10483 Species: Enterobacter cloacae (50%)	4	2209 bp	62.29	60.84	100.50
L3_069_242G1_scaffold_22921 Species: [Clostridium] bolteae (50%)	2	1015 bp	49.36	3.84	100.49
L3_069_242G1_scaffold_18921 Species: Blautia sp. KLE 1732 (50%)	2	1218 bp	42.12	2.71	100.49
L3_069_242G1_scaffold_16073 Species: [Clostridium] saccharolyticum (50%)	2	1424 bp	48.38	4.74	100.49
L3_069_242G1_scaffold_6384 Species: Lachnospiraceae bacterium 7_1_58FAA (50%)	4	3675 bp	59.56	6.86	100.49
L3_069_242G1_scaffold_37116 Species: Enterobacter cloacae (66.67%)	3	1021 bp	63.27	42.16	100.49
L3_069_242G1_scaffold_14015 Species: Enterobacter cloacae (50%)	2	1636 bp	57.46	7.98	100.49
L3_069_242G1_scaffold_22639 Species: Veillonella sp. ACP1 (50%)	2	1027 bp	40.31	5.70	100.49
L3_069_242G1_scaffold_22646 Species: Lachnospiraceae bacterium 7_1_58FAA (66.67%)	3	1027 bp	56.77	2.63	100.49
L3_069_242G1_scaffold_22570 Species: Erysipelotrichaceae bacterium 2_2_44A (50%)	2	1030 bp	50.00	2.48	100.49

Displaying items 401-450 of 23185 in total

L3_069_242G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L3_069_242G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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