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L3_072_057G1_scaffold_10

Search features with annotation key words

Displaying items 1-30 of 151 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_057G1_scaffold_10_1
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(130..1797)
DNA (1668bp) protein (556aa)
rnjA1; ribonuclease J 1 (EC:3.1.-.-)
Ribonuclease J 1 {ECO:0000313|EMBL:AGX42335.1}; EC=3.1.-.- {ECO:0000313|EMBL:AGX42335.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Ribonuclease J 1 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP12_CLOSA
L3_072_057G1_scaffold_10_2
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1838..2299)
DNA (462bp) protein (154aa)
Ferric uptake regulator, Fur family n=2 Tax=Clostridium RepID=A6LSG0_CLOB8
ferric uptake regulator family protein
Ferric uptake regulator family protein {ECO:0000313|EMBL:AJG97845.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L3_072_057G1_scaffold_10_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2326..2595)
DNA (270bp) protein (90aa)
UPF0473 protein CLH_1128 n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=Y1128_CLOBA
hypothetical protein
UPF0473 protein UC77_14035 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_072_057G1_scaffold_10_4
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2671..3090)
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Putative Holliday junction resolvase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEU1_9CLOT
hypothetical protein
L3_072_057G1_scaffold_10_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3143..3400)
DNA (258bp) protein (86aa)
UPF0297 protein CLH_1126 n=4 Tax=Clostridium botulinum RepID=Y1126_CLOBA
hypothetical protein
UPF0297 protein U728_3617 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_072_057G1_scaffold_10_6
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3535..6174)
DNA (2640bp) protein (880aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
alaS; alanine--tRNA ligase (EC:6.1.1.7)
Alanyl-tRNA synthetase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H378_9CLOT
L3_072_057G1_scaffold_10_7
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6479..7510)
DNA (1032bp) protein (344aa)
Permease n=2 Tax=Clostridium botulinum B RepID=B2THM9_CLOBB
permease
Permease {ECO:0000313|EMBL:ACD24042.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_072_057G1_scaffold_10_8
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7488..7988)
DNA (501bp) protein (167aa)
PRC-barrel domain protein n=2 Tax=Clostridium RepID=A6LSF4_CLOB8
PRC-barrel domain-containing protein
Photosystem reaction center subunit H {ECO:0000313|EMBL:ETD71506.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L3_072_057G1_scaffold_10_9
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8103..9179)
DNA (1077bp) protein (359aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QIL9_9CLOT
L3_072_057G1_scaffold_10_10
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9189..9626)
DNA (438bp) protein (146aa)
FeS cluster assembly scaffold protein NifU n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H439_9CLOT
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:EEH98236.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
nifU; FeS cluster assembly scaffold protein NifU
L3_072_057G1_scaffold_10_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9629..10810)
DNA (1182bp) protein (394aa)
nifS; cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Cysteine desulfurase n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1B4_9CLOT
L3_072_057G1_scaffold_10_12
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10823..11266)
DNA (444bp) protein (148aa)
Putative HTH-type transcriptional regulator IscR n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QJW7_9CLOT
Putative HTH-type transcriptional regulator IscR {ECO:0000313|EMBL:EKY27857.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
cymR; HTH-type transcriptional regulator CymR
L3_072_057G1_scaffold_10_13
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11421..13166
DNA (1746bp) protein (582aa)
Glycoside hydrolase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FUU5_CLOPA
Glycoside hydrolase {ECO:0000313|EMBL:ETD67197.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
glycoside hydrolase
L3_072_057G1_scaffold_10_14
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13215..14486)
DNA (1272bp) protein (424aa)
Predicted ATPase related to the helicase subunit of the Holliday junction resolvase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KFV2_9CLOT
Predicted ATPase related to the helicase subunit of the Holliday junction resolvase {ECO:0000313|EMBL:CDB74018.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
sigma-54 interaction domain protein
L3_072_057G1_scaffold_10_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14596..15393)
DNA (798bp) protein (266aa)
phosphonates import ATP-binding protein PhnC 2 (EC:3.6.3.28)
Phosphonates import ATP-binding protein PhnC 2 {ECO:0000313|EMBL:EES50679.1}; EC=3.6.3.28 {ECO:0000313|EMBL:EES50679.1};; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
Phosphonates import ATP-binding protein PhnC 2 n=2 Tax=Clostridium botulinum E RepID=B2V3T3_CLOBA
L3_072_057G1_scaffold_10_16
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15353..16279)
DNA (927bp) protein (309aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QEJ4_9CLOT
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EKY26346.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
ABC transporter
L3_072_057G1_scaffold_10_17
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16279..17280)
DNA (1002bp) protein (334aa)
ABC transporter substrate-binding protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002DF0865
ABC transporter substrate binding protein {ECO:0000313|EMBL:EHI98348.1}; Flags: Precursor;; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L3_072_057G1_scaffold_10_18
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17562..18368
DNA (807bp) protein (269aa)
Mechanosensitive ion channel family protein n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SWG3_CLOPS
mechanosensitive ion channel family protein
Mechanosensitive ion channel family protein {ECO:0000313|EMBL:CDM68250.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_072_057G1_scaffold_10_19
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18407..19078)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FMB5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG01769.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
L3_072_057G1_scaffold_10_20
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19665..20990)
DNA (1326bp) protein (442aa)
Maltose-6'-phosphate glucosidase (EC:3.2.1.122)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2B8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH96608.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L3_072_057G1_scaffold_10_21
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21030..22592)
DNA (1563bp) protein (521aa)
PTS system, maltose and glucose-specific IIC component (EC:2.7.1.69)
PTS system, glucose-like IIB component n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HC37_9CLOT
PTS system, glucose-like IIB component {ECO:0000313|EMBL:EEH96607.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L3_072_057G1_scaffold_10_22
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22664..23449)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEJ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH96606.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Cellobiose phosphotransferase system YdjC-like protein
L3_072_057G1_scaffold_10_23
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23687..24406
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H6D8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH96605.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Transcriptional regulator, RpiR family
L3_072_057G1_scaffold_10_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24671..25123
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YSK5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30420.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
IS1470, transposase
L3_072_057G1_scaffold_10_25
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25125..26684)
DNA (1560bp) protein (520aa)
DNA mismatch repair protein MutS domain protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M172_9CLOT
DNA mismatch repair protein MutS domain protein {ECO:0000313|EMBL:EHI99796.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
mutS2; DNA mismatch repair protein MutS
L3_072_057G1_scaffold_10_26
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26961..27629)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEV3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98275.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Two-component response regulator
L3_072_057G1_scaffold_10_27
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27607..28782)
DNA (1176bp) protein (392aa)
Putative Two-component sensor histidine kinase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FNJ2_9CLOT
Putative Two-component sensor histidine kinase {ECO:0000313|EMBL:CDG02234.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
Two-component sensor histidine kinase
L3_072_057G1_scaffold_10_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28930..29166)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H7I8_9CLOT
putative ribonuclease P protein component
Ribonuclease P {ECO:0000313|EMBL:KJU73024.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_072_057G1_scaffold_10_29
unknown

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29322..29729
DNA (408bp) protein (136aa)

This feature has no annotations

L3_072_057G1_scaffold_10_30
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29754..30101)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Smithella sp. ME-1 RepID=V4EPJ0_9DELT
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
Displaying items 1-30 of 151 in total

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