ggKbase home page

L3_082_090G1_scaffold_347

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_082_090G1_scaffold_347_1
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

93..368
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WIH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD10928.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
L3_082_090G1_scaffold_347_2
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

361..633
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WVG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD10929.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
hypothetical protein
L3_082_090G1_scaffold_347_3
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

998..1381
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WPR0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD11345.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
L3_082_090G1_scaffold_347_4
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

1397..1609
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6X514_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD11346.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
DNA-binding protein
L3_082_090G1_scaffold_347_5
unknown

Not on your lists

comp(1691..2335)
DNA (645bp) protein (215aa)
hypothetical protein
L3_082_090G1_scaffold_347_6
unknown

Not on your lists

comp(2633..3256)
DNA (624bp) protein (208aa)

This feature has no annotations

L3_082_090G1_scaffold_347_7
unknown

Not on your lists

comp(3363..4022)
DNA (660bp) protein (220aa)

This feature has no annotations

L3_082_090G1_scaffold_347_8
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4519..5025
DNA (507bp) protein (169aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=4 Tax=Lachnospiraceae RepID=E9RVL7_9FIRM
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000256|HAMAP-Rule:MF_00621}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
GTP-sensing pleiotropic transcriptional repressor CodY
L3_082_090G1_scaffold_347_9
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(5454..5720)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LEZ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY04591.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
L3_082_090G1_scaffold_347_10
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(6065..7453)
DNA (1389bp) protein (463aa)
Glutamate synthase n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WHS6_9FIRM
Glutamate synthase {ECO:0000313|EMBL:CDD10658.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
glutamate synthase (NADPH), homotetrameric
L3_082_090G1_scaffold_347_11
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(7438..8280)
DNA (843bp) protein (281aa)
Oxidoreductase NAD-binding domain protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD03_9FIRM
Oxidoreductase NAD-binding domain protein {ECO:0000313|EMBL:EFY05313.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
oxidoreductase FAD/NAD(P)-binding domain-containing protein
L3_082_090G1_scaffold_347_12
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(8312..9592)
DNA (1281bp) protein (427aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000256|HAMAP-Rule:MF_01281}; Short=MTA/SAH deaminase {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.28 {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.31 {ECO:0000256|HAMAP-Rule:MF_01281};; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD02_9FIRM
amidohydrolase
L3_082_090G1_scaffold_347_13
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(9677..10354)
DNA (678bp) protein (226aa)
L-fuculose-phosphate aldolase (EC:4.1.2.17)
Putative L-ribulose-5-phosphate 4-epimerase n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WMR0_9FIRM
Putative L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:CDD10715.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
L3_082_090G1_scaffold_347_14
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(10357..11601)
DNA (1245bp) protein (415aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
Adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6X382_9FIRM
L3_082_090G1_scaffold_347_15
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11634..12680)
DNA (1047bp) protein (349aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
Methylthioribose-1-phosphate isomerase (EC:5.3.1.23)
Methylthioribose-1-phosphate isomerase n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LCZ9_9FIRM
L3_082_090G1_scaffold_347_16
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(12690..13487)
DNA (798bp) protein (266aa)
Probable 6-oxopurine nucleoside phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01963};; Purine nucleoside phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
Probable 6-oxopurine nucleoside phosphorylase n=2 Tax=Phascolarctobacterium succinatutens RepID=E8LCZ8_9FIRM
purine or other phosphorylase family 1
L3_082_090G1_scaffold_347_17
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(13780..14433)
DNA (654bp) protein (218aa)
HAD-superfamily hydrolase (EC:3.6.1.1)
HAD hydrolase, family IA, variant 3 n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LCZ7_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EFY05307.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
L3_082_090G1_scaffold_347_18
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(14565..15857)
DNA (1293bp) protein (431aa)
Glycosyltransferase, group 2 family protein n=2 Tax=Phascolarctobacterium succinatutens RepID=E8LCZ6_9FIRM
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CDD10726.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
glycosyl transferase family protein
L3_082_090G1_scaffold_347_19
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(15889..16572)
DNA (684bp) protein (228aa)
CDP-diacylglycerol-serine O-phosphatidyltransferase n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WHZ1_9FIRM
CDP-diacylglycerol-serine O-phosphatidyltransferase {ECO:0000313|EMBL:CDD10728.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
CDP-diacylglycerol/serine O-phosphatidyltransferase
L3_082_090G1_scaffold_347_20
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(16569..17201)
DNA (633bp) protein (211aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WUX8_9FIRM
L3_082_090G1_scaffold_347_21
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(17412..18140)
DNA (729bp) protein (243aa)
Glycosyltransferase WecB/TagA/CpsF family n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WMS5_9FIRM
Glycosyltransferase WecB/TagA/CpsF family {ECO:0000313|EMBL:CDD10730.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
glycosyl transferase family protein
L3_082_090G1_scaffold_347_22
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(18267..18971)
DNA (705bp) protein (235aa)
Transcriptional regulatory protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6X394_9FIRM
Transcriptional regulatory protein {ECO:0000256|PIRNR:PIRNR006171}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
response regulator
L3_082_090G1_scaffold_347_23
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(18973..20628)
DNA (1656bp) protein (552aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
sensory histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6XWT5_9FIRM
L3_082_090G1_scaffold_347_24
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(20612..22222)
DNA (1611bp) protein (537aa)
Peptide chain release factor 3 n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WHZ4_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
peptide chain release factor 3
L3_082_090G1_scaffold_347_25
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(22238..22864)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LCY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY05299.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
L3_082_090G1_scaffold_347_26
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(23452..24363)
DNA (912bp) protein (304aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
Homoserine kinase n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6XWU0_9FIRM
homoserine kinase
L3_082_090G1_scaffold_347_27
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(24376..25680)
DNA (1305bp) protein (435aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
Homoserine dehydrogenase n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LCY6_9FIRM
homoserine dehydrogenase
L3_082_090G1_scaffold_347_28
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(25715..26158)
DNA (444bp) protein (148aa)
UPF0735 ACT domain-containing protein BN587_02114 n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WUY8_9FIRM
UPF0735 ACT domain-containing protein BN587_02114 {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
amino acid-binding ACT protein
L3_082_090G1_scaffold_347_29
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(26366..26923)
DNA (558bp) protein (186aa)
Elongation factor P n=2 Tax=Phascolarctobacterium succinatutens RepID=E8LCY4_9FIRM
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
translation elongation factor P
L3_082_090G1_scaffold_347_30
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(26950..28023)
DNA (1074bp) protein (358aa)
Xaa-Pro dipeptidase n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6X3A4_9FIRM
Xaa-Pro dipeptidase {ECO:0000313|EMBL:CDD10741.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
peptidase M24
Displaying items 1-30 of 43 in total

View Taxonomy