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L1_008_000G1_scaffold_404

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_404_1
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(419..1744)
DNA (1326bp) protein (442aa)
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:EWC94484.1}; EC=2.4.2.2 {ECO:0000313|EMBL:EWC94484.1};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
pyrimidine-nucleoside phosphorylase (EC:2.4.2.4)
Pyrimidine-nucleoside phosphorylase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Z5_ATOPD
L1_008_000G1_scaffold_404_2
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1974..2522)
DNA (549bp) protein (183aa)
Cytidine deaminase {ECO:0000313|EMBL:EWC94499.1}; EC=3.5.4.5 {ECO:0000313|EMBL:EWC94499.1};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
Cytidine deaminase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Z4_ATOPD
cytidine deaminase
L1_008_000G1_scaffold_404_3
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2522..3445)
DNA (924bp) protein (308aa)
Inner-membrane translocator n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Z3_ATOPD
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EWC94479.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
inner-membrane translocator
L1_008_000G1_scaffold_404_4
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3435..4637)
DNA (1203bp) protein (401aa)
Inner-membrane translocator n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Z2_ATOPD
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EWC93793.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
inner-membrane translocator
L1_008_000G1_scaffold_404_5
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(4634..6163)
DNA (1530bp) protein (510aa)
ABC transporter related n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Z1_ATOPD
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EWC94433.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
ABC transporter-like protein
L1_008_000G1_scaffold_404_6
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6312..7388)
DNA (1077bp) protein (359aa)
Basic membrane lipoprotein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Z0_ATOPD
Basic membrane protein {ECO:0000313|EMBL:EWC93802.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
basic membrane lipoprotein
L1_008_000G1_scaffold_404_7
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7552..8262)
DNA (711bp) protein (237aa)
Purine-nucleoside phosphorylase {ECO:0000256|SAAS:SAAS00035203}; EC=2.4.2.1 {ECO:0000256|SAAS:SAAS00035203};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
Purine nucleoside phosphorylase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Y9_ATOPD
purine nucleoside phosphorylase
L1_008_000G1_scaffold_404_8
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8262..9452)
DNA (1191bp) protein (397aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Y8_ATOPD
L1_008_000G1_scaffold_404_9
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

9860..10942
DNA (1083bp) protein (361aa)
Transcriptional regulator, MarR family n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Y7_ATOPD
Winged helix-turn-helix DNA-binding protein {ECO:0000313|EMBL:EWC93812.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
MarR family transcriptional regulator
L1_008_000G1_scaffold_404_10
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

11034..11960
DNA (927bp) protein (309aa)
Pseudouridine-5'-phosphate glycosidase {ECO:0000256|HAMAP-Rule:MF_01876}; Short=PsiMP glycosidase {ECO:0000256|HAMAP-Rule:MF_01876};; EC=4.2.1.70 {ECO:0000256|HAMAP-Rule:MF_01876};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
Pseudouridine-5'-phosphate glycosidase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Y6_ATOPD
Indigoidine synthase A family protein
L1_008_000G1_scaffold_404_11
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12657..13388
DNA (732bp) protein (244aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Y5_ATOPD
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EWC95124.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
Crp/Fnr family transcriptional regulator
L1_008_000G1_scaffold_404_12
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

13537..15039
DNA (1503bp) protein (501aa)
Uncharacterized protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Y4_ATOPD
Glycine radical enzyme, YjjI family {ECO:0000313|EMBL:EWC91323.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
hypothetical protein
L1_008_000G1_scaffold_404_13
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

15059..15943
DNA (885bp) protein (295aa)
Glycine radical enzyme activase, YjjW family {ECO:0000313|EMBL:EWC91402.1}; EC=1.97.1.- {ECO:0000313|EMBL:EWC91402.1};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
(formate-C-acetyltransferase)-activating protein (EC:1.97.1.4)
(Formate-C-acetyltransferase)-activating enzyme n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Y3_ATOPD
L1_008_000G1_scaffold_404_14
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16170..16811)
DNA (642bp) protein (214aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Y2_ATOPD
L1_008_000G1_scaffold_404_15
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16968..17996)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F840_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EWC91342.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
hypothetical protein
L1_008_000G1_scaffold_404_16
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18536..19750)
DNA (1215bp) protein (405aa)
NADPH-dependent butanol dehydrogenase {ECO:0000313|EMBL:EWC91369.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EWC91369.1};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
Iron-containing alcohol dehydrogenase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Y1_ATOPD
iron-containing alcohol dehydrogenase
L1_008_000G1_scaffold_404_17
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

20058..21251
DNA (1194bp) protein (398aa)
Response regulator receiver and SARP domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8Y0_ATOPD
Uncharacterized protein {ECO:0000313|EMBL:EWC95111.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
response regulator receiver and SARP domain-containing protein
L1_008_000G1_scaffold_404_18
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21248..22276
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8X9_ATOPD
Uncharacterized protein {ECO:0000313|EMBL:EWC95113.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
hypothetical protein
L1_008_000G1_scaffold_404_19
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22481..23572)
DNA (1092bp) protein (364aa)
Transketolase central region n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8X8_ATOPD
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:EWC95109.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
transketolase
L1_008_000G1_scaffold_404_20
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23566..25305)
DNA (1740bp) protein (580aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8X7_ATOPD
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EWC91336.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
UbiC transcription regulator-associated domain-containing protein
L1_008_000G1_scaffold_404_21
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(25895..26923)
DNA (1029bp) protein (343aa)
Ppx/GppA phosphatase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8X6_ATOPD
Ppx/GppA phosphatase family protein {ECO:0000313|EMBL:EWC95116.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
Ppx/GppA phosphatase
L1_008_000G1_scaffold_404_22
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(26923..27891)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8X5_ATOPD
Uncharacterized protein {ECO:0000313|EMBL:EWC91398.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
hypothetical protein
L1_008_000G1_scaffold_404_23
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(28095..29021)
DNA (927bp) protein (309aa)
MazG family protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8X4_ATOPD
Uncharacterized protein {ECO:0000313|EMBL:EWC95118.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
MazG family protein
L1_008_000G1_scaffold_404_24
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29027..30067)
DNA (1041bp) protein (347aa)
Oxidoreductase domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8X3_ATOPD
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EWC91349.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
oxidoreductase domain-containing protein
L1_008_000G1_scaffold_404_25
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(30070..33513)
DNA (3444bp) protein (1148aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
Transcription-repair-coupling factor n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8X2_ATOPD
transcription-repair coupling factor
L1_008_000G1_scaffold_404_26
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

33794..34465
DNA (672bp) protein (224aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
endonuclease III (EC:4.2.99.18)
Endonuclease III n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8X1_ATOPD
L1_008_000G1_scaffold_404_27
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(35094..35639)
DNA (546bp) protein (182aa)
Rubrerythrin n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8X0_ATOPD
Rubrerythrin {ECO:0000313|EMBL:EWC91324.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
rubrerythrin
L1_008_000G1_scaffold_404_28
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(35817..36785)
DNA (969bp) protein (323aa)
HhH-GPD family protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8W9_ATOPD
Uncharacterized protein {ECO:0000313|EMBL:EWC94131.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
HhH-GPD family protein
L1_008_000G1_scaffold_404_29
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(36817..37413)
DNA (597bp) protein (199aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8W8_ATOPD
Transcriptional regulator {ECO:0000313|EMBL:EWC91357.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
BadM/Rrf2 family transcriptional regulator
L1_008_000G1_scaffold_404_30
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(37566..38324)
DNA (759bp) protein (253aa)
HAD-superfamily subfamily IB hydrolase, TIGR01490 n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8W7_ATOPD
HAD hydrolase, family IB {ECO:0000313|EMBL:EWC91316.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
HAD-superfamily hydrolase
Displaying items 1-30 of 45 in total

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