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L3_114_000M1_scaffold_448

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_448_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..775)
DNA (774bp) protein (258aa)
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EFB75912.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFB75912.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Peptidase M16 inactive domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMX7_9FIRM
Predicted Zn-dependent peptidases
L3_114_000M1_scaffold_448_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(765..2087)
DNA (1323bp) protein (441aa)
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EFB75913.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFB75913.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Peptidase M16 inactive domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMX8_9FIRM
Predicted Zn-dependent peptidases
L3_114_000M1_scaffold_448_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2301..3581
DNA (1281bp) protein (427aa)
Cytosine deaminase and related metal-dependent hydrolases (EC:3.5.4.3)
Putative guanine deaminase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPG4_9FIRM
Putative guanine deaminase {ECO:0000313|EMBL:EFB75427.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_448_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3810..5015)
DNA (1206bp) protein (402aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aspartate kinase, monofunctional class (EC:2.7.2.4)
Aspartokinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY0_9FIRM
L3_114_000M1_scaffold_448_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5043..5933)
DNA (891bp) protein (297aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
homoserine kinase (EC:2.7.1.39)
Homoserine kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY1_9FIRM
L3_114_000M1_scaffold_448_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5950..7179)
DNA (1230bp) protein (410aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY2_9FIRM
L3_114_000M1_scaffold_448_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7316..7744)
DNA (429bp) protein (143aa)
ACT domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY3_9FIRM
ACT domain protein {ECO:0000313|EMBL:EFB75918.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
amino acid-binding ACT protein
L3_114_000M1_scaffold_448_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8069..10681)
DNA (2613bp) protein (871aa)
Membrane carboxypeptidase (penicillin-binding protein) (EC:2.4.1.- 3.4.-.-)
Transglycosylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY5_9FIRM
Transglycosylase {ECO:0000313|EMBL:EFB75920.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_448_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10806..11117
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75922.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_448_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11360..11599
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75923.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative acyl carrier protein
L3_114_000M1_scaffold_448_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11682..12098
DNA (417bp) protein (139aa)
MaoC-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY9_9FIRM
MaoC-like protein {ECO:0000313|EMBL:EFB75924.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
MaoC domain-containing protein dehydratase
L3_114_000M1_scaffold_448_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12112..12855
DNA (744bp) protein (248aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ0_9FIRM
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EFB75925.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
short-chain dehydrogenase/reductase SDR
L3_114_000M1_scaffold_448_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12848..13843
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75926.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_448_14
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13904..15658)
DNA (1755bp) protein (585aa)
Beta-galactosidase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I575_9FIRM
Beta-galactosidase {ECO:0000313|EMBL:CDE46646.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
beta-galactosidase
L3_114_000M1_scaffold_448_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15687..17399)
DNA (1713bp) protein (571aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S907_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP22300.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
hypothetical protein
L3_114_000M1_scaffold_448_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17399..18562)
DNA (1164bp) protein (388aa)
Glycosyl Hydrolase Family 88 n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KCV9_9FIRM
Glycosyl Hydrolase Family 88.
Glycosyl Hydrolase Family 88 {ECO:0000313|EMBL:CBL02672.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_114_000M1_scaffold_448_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18781..19644)
DNA (864bp) protein (288aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K1U9_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL00248.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000M1_scaffold_448_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19663..20580)
DNA (918bp) protein (306aa)
ABC transporter, permease protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJR2_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFQ06601.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_448_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20694..22034)
DNA (1341bp) protein (447aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K1U7_9FIRM
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL00246.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000M1_scaffold_448_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22414..24219
DNA (1806bp) protein (602aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KCV4_9FIRM
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain.
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain {ECO:0000313|EMBL:CBL02667.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_114_000M1_scaffold_448_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24233..25516
DNA (1284bp) protein (428aa)
Response regulator receiver domain protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJR7_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFQ06606.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L3_114_000M1_scaffold_448_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25485..27308
DNA (1824bp) protein (608aa)
Heparinase II/III-like protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K1U4_9FIRM
Heparinase II/III-like protein.
Heparinase II/III-like protein {ECO:0000313|EMBL:CBL00243.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000M1_scaffold_448_23
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27308..27904
DNA (597bp) protein (199aa)
Uncharacterized protein n=2 Tax=Faecalibacterium prausnitzii RepID=A8SBB9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL02582.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_114_000M1_scaffold_448_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27905..28696
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K1U3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL00242.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000M1_scaffold_448_25
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29191..30048)
DNA (858bp) protein (286aa)
membrane protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00030EB0B6
Uncharacterized conserved protein {ECO:0000313|EMBL:CDB20432.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
hypothetical protein
L3_114_000M1_scaffold_448_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31450..33375
DNA (1926bp) protein (642aa)
Initiator RepB protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMT8_9FIRM
Initiator RepB protein {ECO:0000313|EMBL:EFB75873.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
protein involved in initiation of plasmid replication
Displaying 26 items

View Taxonomy