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cn_combo_scaffold_50_30

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: 31212..32222

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBB0_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 68.7
  • Coverage: 319.0
  • Bit_score: 445
  • Evalue 3.80e-122
Variovorax paradoxus strain MEDvA23 contig_49, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28220.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona similarity UNIPROT
DB: UniProtKB
  • Identity: 67.4
  • Coverage: 328.0
  • Bit_score: 448
  • Evalue 1.10e-122
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 68.7
  • Coverage: 319.0
  • Bit_score: 445
  • Evalue 1.10e-122

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1011
ATGGGCTTGCGCGAGCTAGAAACCGGTGTCCGTTCCACGCTCCGGAACGGCATCTTCCACAGTCATTTCGACGTGGCTGCAGAACCCCCGCAGAGGCAGCTCGAGGCCTGGCGGGAGCGCGTCGGCCACGTGATCGACGTGGTGCCCTCCTCTGCCGGCATCGGCAAGCCCTTCCAGGCAGCCATCGACCGCTACGAAGTCGGCGACATCGTCTTCACCGACTGCCGCTCCGACGCCATGCTGCTCGAGCGCTCCCTCGCACGCATCTCCACCGACAACGTCCGCAACTTCGCCTTCCATGTGTTCGCCGAAGGCGATGTCGACAGCGTGACCGTGCGCTCGTCCGCGCAGCGCGACGCACCGGCCGCCGCGAAGCTCGTGGCGCTCGACATGGGCCAGCCGGTGCGCATGCATCGCAACGCCTGCCGGGTGCTGAGCTTCTTCGTGCCGGGCACGATGCTGCAGGAGGTCTTTCCGGACCCCGCGGCCGTCCACGCCCGCACGATGCAGCCCGACTCGCCCATCGCGCGACTGGCCCTGGACCACGCGGCCGCGCTCGGCCGAGAGATCGCGACGCTGAGCGCCCCGGCCGCCGAAGGCGCCGTGCGCGATGCCGTGCAGCTGCTGGTCGCGAGCTTCGGCAAACAGGCACGCCTGAGCGGCGGTGCGCGCGCCGCGGCCCGCGCGGCGATGTTCGGGCAGGTGCGCCGCTATGTGCAGGCCAACCTGCATCGCGCCGACCTGTCGCCCGAAAACGTGCTTGCGGCGCTGCACCTTCCGCGCCCCACCCTCTACCGCCTGTTCCAGCATGAAGGCGGCCTGGGCGCATACATCCGCCACCTGCGGCTGCGGCATGCGGCCGACGACCTCGTGCGCTACCCGCACCTGATGGTGACGGACGTGGCCTATGGCGTCGGGTTCAAGAGCCCGTCGGATTTCACGCGGGCTTTCCGCAGGGCCTACAGCATGTCGCCGCAGGAATTCAGGGCTTCTTCGGGCTCGCCGCTGTAA
PROTEIN sequence
Length: 337
MGLRELETGVRSTLRNGIFHSHFDVAAEPPQRQLEAWRERVGHVIDVVPSSAGIGKPFQAAIDRYEVGDIVFTDCRSDAMLLERSLARISTDNVRNFAFHVFAEGDVDSVTVRSSAQRDAPAAAKLVALDMGQPVRMHRNACRVLSFFVPGTMLQEVFPDPAAVHARTMQPDSPIARLALDHAAALGREIATLSAPAAEGAVRDAVQLLVASFGKQARLSGGARAAARAAMFGQVRRYVQANLHRADLSPENVLAALHLPRPTLYRLFQHEGGLGAYIRHLRLRHAADDLVRYPHLMVTDVAYGVGFKSPSDFTRAFRRAYSMSPQEFRASSGSPL*