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CN-SCN_Variovorax_85x

CN-SCN_Variovorax_67_87
In projects: CN-SCN

Consensus taxonomy: Variovorax  →  Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 86.91 Longest contig: 752.51 Kbp Bin length: 7.71 Mbp GC content: 67.38 %
Contigs count: 61 Features count: 7151 rRNAs count: 0 tRNAs count: 52

Genome completeness

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2

Description

Full 50

Displaying items 1-50 of 61 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_10 VAR87_52
Genus: Variovorax (79.01%)
667 752513 bp 67.27 82.43 93.39
cn_combo_scaffold_116 VAR87_16
Genus: Variovorax (89.24%)
381 388355 bp 68.18 91.73 93.63
cn_combo_scaffold_101 VAR87_10
Genus: Variovorax (89.38%)
339 352783 bp 68.03 90.84 93.64
cn_combo_scaffold_52 VAR87_8
Genus: Variovorax (67.42%)
310 385660 bp 67.30 87.60 92.32
cn_combo_scaffold_112 VAR87_11
Genus: Variovorax (75.74%)
305 317202 bp 67.02 93.68 92.03
cn_combo_scaffold_31 VAR87_2
Species: Variovorax sp. CF313 (55.06%)
267 278346 bp 67.18 81.63 93.98
cn_combo_scaffold_142 VAR87_14
Genus: Variovorax (88.57%)
245 272283 bp 67.41 88.34 94.02
cn_combo_scaffold_34 VAR87_3
Genus: Variovorax (80.17%)
237 248830 bp 67.26 87.88 92.98
cn_combo_scaffold_29 VAR87_1
Genus: Variovorax (83.33%)
234 252779 bp 67.42 91.72 92.97
cn_combo_scaffold_144 VAR87_12
Genus: Variovorax (85.65%)
223 221821 bp 66.92 85.77 93.01
cn_combo_scaffold_50 VAR87_5
Genus: Variovorax (83.95%)
218 230888 bp 67.73 87.48 94.32
cn_combo_scaffold_35 VAR87_4
Genus: Variovorax (75.12%)
217 243419 bp 68.45 79.98 94.97
cn_combo_scaffold_51 VAR87_55
Order: Burkholderiales (82.35%)
204 220684 bp 66.54 88.10 92.64
cn_combo_scaffold_78 VAR87_6
Genus: Variovorax (79.1%)
201 218504 bp 66.85 84.40 93.03
cn_combo_scaffold_102 VAR87_7
Species: Variovorax sp. CF313 (55.25%)
181 172199 bp 68.59 89.61 94.31
cn_combo_scaffold_192 VAR87_20
Genus: Variovorax (92.35%)
170 193088 bp 68.78 89.89 94.04
cn_combo_scaffold_93 VAR87_56
Order: Burkholderiales (73.65%)
167 186269 bp 67.33 85.66 93.49
cn_combo_scaffold_120 VAR87_9
Genus: Variovorax (83.44%)
157 161376 bp 67.94 88.75 94.07
cn_combo_scaffold_180 VAR87_15
Order: Burkholderiales (84.73%)
131 135275 bp 68.40 89.47 94.47
cn_combo_scaffold_171 VAR87_13
Genus: Variovorax (82.31%)
130 137913 bp 67.15 81.38 94.45
cn_combo_scaffold_194 VAR87_18
Genus: Variovorax (86.82%)
129 130565 bp 66.92 86.77 93.76
cn_combo_scaffold_183 VAR87_17
Genus: Variovorax (59.06%)
127 135312 bp 64.17 91.54 89.52
cn_combo_scaffold_528 VAR87_25
Species: Variovorax sp. CF313 (54.92%)
122 117284 bp 67.02 89.69 94.03
cn_combo_scaffold_196 VAR87_19
Genus: Variovorax (63.33%)
120 130061 bp 67.83 80.89 92.42
cn_combo_scaffold_674 VAR87_31
Genus: Variovorax (82.5%)
120 125433 bp 68.20 86.67 94.42
cn_combo_scaffold_245 VAR87_57
Class: Betaproteobacteria (54.13%)
109 117227 bp 68.14 85.32 94.43
cn_combo_scaffold_658 VAR87_29
Species: Variovorax sp. CF313 (53.85%)
104 111898 bp 66.61 83.54 91.61
cn_combo_scaffold_373 VAR87_23
Species: Variovorax paradoxus (54%)
100 93716 bp 68.09 88.22 94.27
cn_combo_scaffold_850 VAR87_33
Genus: Variovorax (91.76%)
85 102877 bp 67.28 94.31 90.22
cn_combo_scaffold_364 VAR87_22
Genus: Variovorax (96.2%)
79 94967 bp 68.18 85.48 94.44
cn_combo_scaffold_469 VAR87_24
Genus: Variovorax (75.32%)
77 80189 bp 67.83 83.97 92.61
cn_combo_scaffold_590 VAR87_26
Genus: Variovorax (69.7%)
66 68986 bp 65.03 90.42 91.27
cn_combo_scaffold_657 VAR87_28
Genus: Variovorax (67.69%)
65 77965 bp 67.35 84.56 88.92
cn_combo_scaffold_890 VAR87_32
Genus: Variovorax (69.35%)
62 53486 bp 66.96 88.54 89.99
cn_combo_scaffold_1444 VAR87_39
Genus: Variovorax (90%)
60 67631 bp 67.32 80.64 92.35
cn_combo_scaffold_345 VAR87_21
Genus: Variovorax (54.24%)
59 97115 bp 70.07 86.13 96.48
cn_combo_scaffold_1132 VAR87_37
Genus: Variovorax (64.81%)
54 56353 bp 66.64 90.27 94.57
cn_combo_scaffold_904 VAR87_34
Species: Variovorax paradoxus (81.13%)
53 52643 bp 62.84 84.17 89.56
cn_combo_scaffold_663 VAR87_27
Genus: Variovorax (82.69%)
52 63633 bp 66.04 80.65 89.44
cn_combo_scaffold_956 VAR87_35
Genus: Variovorax (85.71%)
49 50469 bp 67.46 88.27 94.95
cn_combo_scaffold_689 VAR87_30
Genus: Variovorax (50%)
48 62212 bp 68.51 81.82 92.90
cn_combo_scaffold_1066 VAR87_36
Species: Variovorax sp. CF313 (53.19%)
47 45824 bp 68.20 92.62 91.84
cn_combo_scaffold_1152 VAR87_38
Species: Variovorax sp. CF313 (50%)
46 42600 bp 68.17 88.38 93.99
cn_combo_scaffold_1148 VAR87_59
Order: Burkholderiales (75.56%)
45 42697 bp 63.74 99.85 90.08
cn_combo_scaffold_1118 VAR87_58
Order: Burkholderiales (88.1%)
42 43848 bp 68.48 86.10 95.80
cn_combo_scaffold_1352 VAR87_60
Order: Burkholderiales (55.56%)
36 37942 bp 66.33 85.80 86.46
cn_combo_scaffold_1828 VAR87_40
Species: Variovorax sp. CF313 (65.63%)
32 30638 bp 68.95 89.36 92.33
cn_combo_scaffold_2201 VAR87_62b
Order: Burkholderiales (92%)
25 25078 bp 63.25 87.32 82.41
cn_combo_scaffold_2087 VAR87_41
Species: Variovorax sp. CF313 (52.17%)
23 26284 bp 67.30 90.35 92.00
cn_combo_scaffold_1635 VAR87_61
Order: Burkholderiales (71.43%)
21 32053 bp 64.10 84.34 93.50
Displaying items 1-50 of 61 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.