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cn_combo_scaffold_120

Alias: VAR87_9

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Displaying items 1-30 of 157 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_120_1
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..114)
DNA (114bp) protein (38aa)
electron transfer flavoprotein subunit beta n=1 Tax=Variovorax paradoxus RepID=UPI000372A643
electron transfer flavoprotein subunit beta
Uncharacterized protein {ECO:0000313|EMBL:EXU78427.1}; Flags: Fragment;; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Coma
cn_combo_scaffold_120_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(153..1154)
DNA (1002bp) protein (334aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000364CDE0
Uncharacterized protein {ECO:0000313|EMBL:EJL70116.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
cn_combo_scaffold_120_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1190..3142)
DNA (1953bp) protein (651aa)
AMP-dependent synthetase n=1 Tax=Variovorax paradoxus RepID=UPI000368993B
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EJL70115.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
AMP-dependent synthetase and ligase
cn_combo_scaffold_120_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3198..4190)
DNA (993bp) protein (331aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003600FE7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35092.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
cn_combo_scaffold_120_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4231..5439)
DNA (1209bp) protein (403aa)
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J2KA98_9BURK
Putative acyl-CoA transferase/carnitine dehydratase {ECO:0000313|EMBL:EJL70113.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadace
L-carnitine dehydratase/bile acid-inducible protein f
cn_combo_scaffold_120_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5501..6328)
DNA (828bp) protein (276aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Variovorax sp. CF313 RepID=J2SWX6_9BURK
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EJL70112.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Vario
enoyL-CoA hydratase/isomerase
cn_combo_scaffold_120_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6325..7467)
DNA (1143bp) protein (381aa)
Acyl-CoA dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J3CF29_9BURK
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EJL70111.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;
acyL-CoA dehydrogenase domain-containing protein
cn_combo_scaffold_120_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7480..8688)
DNA (1209bp) protein (403aa)
acyl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI0003749299
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ACS17495.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor
cn_combo_scaffold_120_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8699..9889)
DNA (1191bp) protein (397aa)
acetyl-CoA acetyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00037B7502
acetyl-CoA acetyltransferase
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AGU48024.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax parad
cn_combo_scaffold_120_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9921..12056)
DNA (2136bp) protein (712aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000369F3A5
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EJL70108.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp
fatty acid oxidation complex, subunit alpha
cn_combo_scaffold_120_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12196..13089
DNA (894bp) protein (298aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036058BD
Transcriptional regulator {ECO:0000313|EMBL:EJL70107.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF31
LysR family transcriptional regulator
cn_combo_scaffold_120_12
Oxalobacteraceae bacterium JGI 0001004-K23, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13118..14467)
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00036B81A4
cn_combo_scaffold_120_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14748..16235)
DNA (1488bp) protein (496aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Variovorax sp. CF313 RepID=J3CF26_9BURK
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJL70106.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonada
diguanylate cyclase
cn_combo_scaffold_120_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16325..16927)
DNA (603bp) protein (201aa)
phospholipid-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036D5646
Raf kinase inhibitor-like protein, YbhB/YbcL family {ECO:0000313|EMBL:EJL70105.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadace
pebp family protein
cn_combo_scaffold_120_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16960..17319)
DNA (360bp) protein (120aa)
(2Fe-2S)-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000370BF11
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase {ECO:0000313|EMBL:EJL70104.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
rieske (2fe-2S) iron-sulfur domain
cn_combo_scaffold_120_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17449..18702
DNA (1254bp) protein (418aa)
Radical SAM domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAJ3_VARPE
radical SAM protein
Radical SAM domain protein {ECO:0000313|EMBL:ADU35103.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxu
cn_combo_scaffold_120_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18708..20231
DNA (1524bp) protein (508aa)
uracil-DNA glycosylase n=1 Tax=Variovorax paradoxus RepID=UPI000371E69F
Variovorax paradoxus strain MEDvA23 contig_26, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32740.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
uracil-DNA glycosylase superfamily protein
cn_combo_scaffold_120_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20334..21071
DNA (738bp) protein (246aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAK3_VARPE
peptidoglycan-binding domain 1 protein
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:ADU35113.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovo
cn_combo_scaffold_120_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21169..21378
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2SWX1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL70102.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
cn_combo_scaffold_120_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21382..21924
DNA (543bp) protein (181aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Variovorax sp. CF313 RepID=J3CF24_9BURK
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL70101.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
RNA polymerase, sigma-24 subunit, ECF subfamily
cn_combo_scaffold_120_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21921..22952
DNA (1032bp) protein (344aa)
dihydroorotase, homodimeric type (EC:3.5.2.3)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU00
dihydroorotase n=1 Tax=Variovorax paradoxus RepID=UPI00035E79A4
cn_combo_scaffold_120_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22949..23749
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAK6_VARPE
Variovorax paradoxus strain MEDvA23 contig_26, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32737.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
hypothetical protein
cn_combo_scaffold_120_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23746..24501
DNA (756bp) protein (252aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000362045A
Uncharacterized protein {ECO:0000313|EMBL:EJL69222.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
transmembrane protein
cn_combo_scaffold_120_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24605..25480
DNA (876bp) protein (292aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhol
heat shock protein HtpX n=1 Tax=Variovorax paradoxus RepID=UPI000375D08E
heat shock protein HtpX
cn_combo_scaffold_120_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25543..26532)
DNA (990bp) protein (330aa)
Activator of osmoprotectant transporter ProP n=1 Tax=Variovorax sp. CF313 RepID=J3CDF4_9BURK
Activator of osmoprotectant transporter ProP {ECO:0000313|EMBL:EJL69226.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
fertility inhibition fino-like protein
cn_combo_scaffold_120_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26584..27213)
DNA (630bp) protein (210aa)
Conserved protein of DIM6/NTAB family n=1 Tax=Variovorax sp. CF313 RepID=J2SUD8_9BURK
Conserved protein of DIM6/NTAB family {ECO:0000313|EMBL:EJL69227.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovo
flavin reductase domain-containing protein
cn_combo_scaffold_120_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27222..27791)
DNA (570bp) protein (190aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00037CF4A0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35121.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
cn_combo_scaffold_120_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27791..29476)
DNA (1686bp) protein (562aa)
FAD-dependent dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2K7L8_9BURK
FAD-dependent dehydrogenase {ECO:0000313|EMBL:EJL69228.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF
fad dependent oxidoreductase
cn_combo_scaffold_120_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29513..30433)
DNA (921bp) protein (307aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Var
cysteine synthase n=1 Tax=Variovorax paradoxus RepID=UPI00037834ED
cysteine synthase a
cn_combo_scaffold_120_30
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30505..31023)
DNA (519bp) protein (173aa)
methionine sulfoxide reductase B n=1 Tax=Pseudomonas sp. CBZ-4 RepID=UPI00034C9C34
methionine sulfoxide reductase
Methionine sulfoxide reductase {ECO:0000313|EMBL:AKC71703.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxal
Displaying items 1-30 of 157 in total

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