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cn_combo_scaffold_956

Alias: VAR87_35

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Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_956_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..394
DNA (393bp) protein (131aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component (Fragment) n=1 Tax=Variovorax sp. CF313 RepID=J2JHC8_9BURK
binding-protein-dependent transport systems inner membrane component
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EJL67330.1}; Flags: Precursor; Fragment;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacte
cn_combo_scaffold_956_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

402..1409
DNA (1008bp) protein (336aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000369688A
Variovorax paradoxus strain MEDvA23 contig_97, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ20565.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
oligopeptide/dipeptide ABC transporter ATPase
cn_combo_scaffold_956_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1406..2221
DNA (816bp) protein (272aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003677269
ATPase component of various ABC-type transport systems with duplicated ATPase domain {ECO:0000313|EMBL:EJL73732.1}; Flags: Fragment;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteri
putative oligopeptide/dipeptide ABC transporter, ATP-binding protein
cn_combo_scaffold_956_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2268..3761
DNA (1494bp) protein (498aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000362BE56
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:EJL73731.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comam
family 5 extracellular solute-binding protein
cn_combo_scaffold_956_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3766..5169
DNA (1404bp) protein (468aa)
amidase n=1 Tax=Variovorax paradoxus RepID=UPI00036D4A35
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:EJL73730.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovo
amidase
cn_combo_scaffold_956_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5194..6642
DNA (1449bp) protein (483aa)
NAD-dependent aldehyde dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J3CL18_9BURK
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJL73729.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor
aldehyde dehydrogenase
cn_combo_scaffold_956_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6652..7542
DNA (891bp) protein (297aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2KKX1_9BURK
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:EJL73728.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
cn_combo_scaffold_956_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7994..8665)
DNA (672bp) protein (224aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamo
TmRNA n=1 Tax=Variovorax sp. CF313 RepID=J2KG30_9BURK
phosphoglycolate phosphatase
cn_combo_scaffold_956_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8662..9381)
DNA (720bp) protein (240aa)
ubiquinone biosynthesis o-methyltransferase (EC:2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CV62_9BURK
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiqui
cn_combo_scaffold_956_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9511..10161)
DNA (651bp) protein (217aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003796FB3
Outer membrane protein/peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:EJL79148.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Coma
putative outer membrane protein OmpA/MotB rbh
cn_combo_scaffold_956_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10386..13031
DNA (2646bp) protein (882aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhold
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Variovorax sp. CF313 RepID=J2TKR7_9BURK
cn_combo_scaffold_956_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13028..13603
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X8E3_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU48823.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
cn_combo_scaffold_956_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13610..14740
DNA (1131bp) protein (377aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine
phosphoserine aminotransferase (EC:2.6.1.52)
MFS transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003805039
cn_combo_scaffold_956_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14770..15894
DNA (1125bp) protein (375aa)
chorismate mutase n=1 Tax=Variovorax paradoxus RepID=UPI000373FBAA
Chorismate mutase, clade 2 {ECO:0000313|EMBL:EJL79144.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF3
chorismate mutase
cn_combo_scaffold_956_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15914..16804
DNA (891bp) protein (297aa)
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2L1M6_9BURK
Prephenate dehydrogenase {ECO:0000313|EMBL:EJL79143.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="V
cn_combo_scaffold_956_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16806..18818
DNA (2013bp) protein (671aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240533};; TaxID=595537 s
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.7.4.14 2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6N1_VARPE
cn_combo_scaffold_956_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19013..20701
DNA (1689bp) protein (563aa)
30S ribosomal protein S1 n=1 Tax=Variovorax sp. CF313 RepID=J3CVM4_9BURK
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF3
rpsA; 30S ribosomal protein S1
cn_combo_scaffold_956_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20773..21099
DNA (327bp) protein (109aa)
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036F06A5
Integration host factor subunit beta {ECO:0000256|RuleBase:RU003941, ECO:0000256|SAAS:SAAS00062449}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
integration host factor subunit beta
cn_combo_scaffold_956_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21157..21495
DNA (339bp) protein (113aa)
Putative integral membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J3CV57_9BURK
Putative integral membrane protein {ECO:0000313|EMBL:EJL79139.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
hypothetical protein
cn_combo_scaffold_956_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21485..22654
DNA (1170bp) protein (390aa)
Putative N-acetylglucosaminyl transferase n=1 Tax=Variovorax sp. CF313 RepID=J2L1M2_9BURK
Lipopolysaccharide assembly protein B {ECO:0000256|HAMAP-Rule:MF_00994}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variov
hypothetical protein
cn_combo_scaffold_956_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22793..23110
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TKQ9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79137.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
cn_combo_scaffold_956_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23195..23572
DNA (378bp) protein (126aa)
Putative fluoride ion transporter CrcB n=1 Tax=Variovorax sp. CF313 RepID=J2L1L7_9BURK
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Vari
camphor resistance protein CrcB
cn_combo_scaffold_956_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23649..26597
DNA (2949bp) protein (983aa)
cation:proton antiporter n=1 Tax=Variovorax paradoxus RepID=UPI000380E026
NADH/ubiquinone/plastoquinone (complex i)
NADH/Ubiquinone/plastoquinone (Complex I) {ECO:0000313|EMBL:ADU35977.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Vari
cn_combo_scaffold_956_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26597..26947
DNA (351bp) protein (117aa)
Multisubunit Na+/H+ antiporter, MnhC subunit n=1 Tax=Variovorax sp. CF313 RepID=J3CVL7_9BURK
Multisubunit Na+/H+ antiporter, MnhC subunit {ECO:0000313|EMBL:EJL79131.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Var
NADH-ubiquinone oxidoreductase chain 4l
cn_combo_scaffold_956_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27030..28748
DNA (1719bp) protein (573aa)
cation:proton antiporter n=1 Tax=Variovorax paradoxus RepID=UPI00038144A8
NADH/Ubiquinone/plastoquinone (Complex I) {ECO:0000313|EMBL:ADU35975.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovo
NADH/ubiquinone/plastoquinone (complex i)
cn_combo_scaffold_956_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28745..29236
DNA (492bp) protein (164aa)
cation:proton antiporter n=1 Tax=Variovorax paradoxus RepID=UPI0003728621
monovalent cation/h+ antiporter subunit e
Putative monovalent cation/H+ antiporter subunit E {ECO:0000313|EMBL:ADU35974.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae
cn_combo_scaffold_956_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29233..29511
DNA (279bp) protein (93aa)
cation:proton antiporter n=1 Tax=Variovorax paradoxus RepID=UPI00037F7650
multiple resistance and ph regulation protein f
Multiple resistance and pH regulation protein F {ECO:0000313|EMBL:ADU35973.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; V
cn_combo_scaffold_956_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29508..29879
DNA (372bp) protein (124aa)
cation:proton antiporter n=1 Tax=Variovorax paradoxus RepID=UPI00036F09DC
monovalent cation/proton antiporter, mnhg/phag subunit
Monovalent cation/proton antiporter, MnhG/PhaG subunit {ECO:0000313|EMBL:ADU35972.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
cn_combo_scaffold_956_29
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29902..30906)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00030D29CB
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EIM26455.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rh
Pyrimidine precursor biosynthesis enzyme
cn_combo_scaffold_956_30
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31016..31675
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003121337
mtrR; transcriptional regulator
Transcriptional regulatory protein {ECO:0000313|EMBL:AFK56153.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistre
Displaying items 1-30 of 49 in total

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