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cn_combo_scaffold_1066

Alias: VAR87_36

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Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1066_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

552..1553
DNA (1002bp) protein (334aa)
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003682063
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS21865.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovo
cn_combo_scaffold_1066_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1495..2892)
DNA (1398bp) protein (466aa)
Xaa-Pro aminopeptidase n=1 Tax=Variovorax sp. CF313 RepID=J2KHG8_9BURK
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:EJL79630.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;
peptidase m24
cn_combo_scaffold_1066_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2889..3599)
DNA (711bp) protein (237aa)
nucleotidyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036181BD
Nucleoside-diphosphate-sugar pyrophosphorylase family protein {ECO:0000313|EMBL:EJL79631.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vario
nucleotidyl transferase rbh
cn_combo_scaffold_1066_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3614..3994)
DNA (381bp) protein (127aa)
Adenosylmethionine decarboxylase {ECO:0000256|SAAS:SAAS00093036}; EC=4.1.1.50 {ECO:0000256|SAAS:SAAS00093036};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Co
S-adenosylmethionine decarboxylase n=1 Tax=Variovorax paradoxus RepID=UPI00037A5DD3
putative S-adenosylmethionine decarboxylase
cn_combo_scaffold_1066_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4134..6242
DNA (2109bp) protein (703aa)
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35742.1}; EC=2.2.1.1 {ECO:0000313|EMBL:KIQ35742.1};; TaxID=34073 species="Bacteria; Proteobacteria; Bet
transketolase n=1 Tax=Variovorax paradoxus RepID=UPI0003607A53
transketolase
cn_combo_scaffold_1066_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6292..7293
DNA (1002bp) protein (334aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Variovorax sp. CF313 RepID=J3CW11_9BURK
cn_combo_scaffold_1066_7
Chamaesiphon minutus, Chamaesiphon, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(7338..7658)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Chamaesiphon minutus PCC 6605 RepID=K9UDN5_9CHRO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY92304.1}; TaxID=1173020 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Chamaesiphon.;" source="Chamaesiphon minutus PCC 6605.;"
cn_combo_scaffold_1066_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7959..8267)
DNA (309bp) protein (103aa)
antibiotic biosynthesis monooxygenase n=1 Tax=Variovorax paradoxus RepID=UPI00037AEB67
antibiotic biosynthesis monooxygenase
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ADU40122.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor
cn_combo_scaffold_1066_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8400..9725
DNA (1326bp) protein (442aa)
manganese transporter n=1 Tax=Variovorax paradoxus RepID=UPI00037B00B7
mn2+/fe2+ transporter, nramp family
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
cn_combo_scaffold_1066_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9712..10650)
DNA (939bp) protein (313aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000361471F
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35748.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
LysR family transcriptional regulator
cn_combo_scaffold_1066_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10763..11854
DNA (1092bp) protein (364aa)
tartrate dehydrogenase (EC:4.1.1.73)
Tartrate dehydrogenase {ECO:0000313|EMBL:ADU40117.1}; EC=4.1.1.73 {ECO:0000313|EMBL:ADU40117.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; V
Tartrate dehydrogenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V008_VARPE
cn_combo_scaffold_1066_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11943..12977
DNA (1035bp) protein (345aa)
MFS transporter n=1 Tax=Variovorax paradoxus RepID=UPI000377484E
Uncharacterized protein {ECO:0000313|EMBL:EJL79637.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
cn_combo_scaffold_1066_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13033..13323
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E4813
Uncharacterized protein {ECO:0000313|EMBL:EJL79638.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
YCII-like domain-containing protein
cn_combo_scaffold_1066_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13336..14391)
DNA (1056bp) protein (352aa)
Pirin domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V005_VARPE
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35752.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
pirin domain-containing protein
cn_combo_scaffold_1066_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14552..14974)
DNA (423bp) protein (141aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CS71_VARPS
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ACS21851.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" so
cn_combo_scaffold_1066_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15134..16717
DNA (1584bp) protein (528aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CWG6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79641.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
chad domain containing protein
cn_combo_scaffold_1066_17
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16726..17412
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RR90_9RALS
Uncharacterized protein {ECO:0000313|EMBL:KHK53568.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
cn_combo_scaffold_1066_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17423..17899)
DNA (477bp) protein (159aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Variovorax sp. CF313 RepID=J2TM38_9BURK
FKBP-type peptidylprolyl isomerase
cn_combo_scaffold_1066_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17985..19748)
DNA (1764bp) protein (588aa)
Nerd domain protein id=1267953 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
cn_combo_scaffold_1066_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19923..20867)
DNA (945bp) protein (315aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000371B567
Transcriptional regulator {ECO:0000313|EMBL:EJL79643.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF31
transcriptional regulator, LysR family
cn_combo_scaffold_1066_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20944..21324
DNA (381bp) protein (127aa)
DoxX family protein n=1 Tax=Variovorax paradoxus RepID=UPI0003614291
DoxX protein {ECO:0000313|EMBL:EJL79644.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp
DoxX family protein
cn_combo_scaffold_1066_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21372..21959
DNA (588bp) protein (196aa)
NADPH-dependent FMN reductase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V000_VARPE
nadph-dependent fmn reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ADU40109.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax parad
cn_combo_scaffold_1066_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21956..22810
DNA (855bp) protein (285aa)
Pirin-related protein n=1 Tax=Variovorax sp. CF313 RepID=J2KHI1_9BURK
Pirin-related protein {ECO:0000313|EMBL:EJL79645.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pirin domain-containing protein
cn_combo_scaffold_1066_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22891..24093
DNA (1203bp) protein (401aa)
amidohydrolase (EC:3.5.1.32)
Amidohydrolase {ECO:0000313|EMBL:ADU40107.1}; EC=3.5.1.32 {ECO:0000313|EMBL:ADU40107.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovora
Amidohydrolase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZZ8_VARPE
cn_combo_scaffold_1066_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24116..25114
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CW24_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79659.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
putative Bug-like extracytoplasmic solute binding receptor, TTT family
cn_combo_scaffold_1066_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25238..25699
DNA (462bp) protein (154aa)
Putative transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KHJ4_9BURK
Putative transcriptional regulator {ECO:0000313|EMBL:EJL79660.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
XRE family transcriptional regulator
cn_combo_scaffold_1066_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25696..27021
DNA (1326bp) protein (442aa)
HipA domain-containing protein n=1 Tax=Variovorax sp. CF313 RepID=J3CWH7_9BURK
HipA domain-containing protein {ECO:0000313|EMBL:EJL79661.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp.
hipa n-terminal domain-containing protein
cn_combo_scaffold_1066_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27110..27847
DNA (738bp) protein (246aa)
Surface antigen family protein n=1 Tax=Variovorax sp. CF313 RepID=J2TM55_9BURK
Surface antigen family protein {ECO:0000313|EMBL:EJL79662.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp.
17 kDa surface antigen
cn_combo_scaffold_1066_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27994..28908
DNA (915bp) protein (305aa)
dihydrodipicolinate synthase n=1 Tax=Variovorax paradoxus RepID=UPI00036B72E0
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:EJL79663.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;
dihydrodipicolinate synthetase
cn_combo_scaffold_1066_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28960..30102
DNA (1143bp) protein (381aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036342A3
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL79664.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkho
extracellular ligand-binding receptor
Displaying items 1-30 of 47 in total

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