ggKbase home page

cn_combo_scaffold_171

Alias: VAR87_13

Search features with annotation key words

Displaying items 1-30 of 130 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_171_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1599)
DNA (1599bp) protein (533aa)
GTP-binding protein TypA/BipA n=1 Tax=Variovorax paradoxus B4 RepID=T1XC47_VARPD
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:AGU49904.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax para
typA; GTP-binding protein TypA/BipA
cn_combo_scaffold_171_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1596..2561)
DNA (966bp) protein (322aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
truB; tRNA pseudouridine synthase B (EC:5.4.99.25)
tRNA pseudouridine synthase B n=1 Tax=Variovorax sp. CF313 RepID=J3CR71_9BURK
cn_combo_scaffold_171_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2564..2935)
DNA (372bp) protein (124aa)
Ribosome-binding factor A n=1 Tax=Variovorax paradoxus (strain S110) RepID=RBFA_VARPS
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000255|HAMAP-Rule:MF_00003}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax parad
cn_combo_scaffold_171_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2957..5938)
DNA (2982bp) protein (994aa)
Translation initiation factor IF-2 n=1 Tax=Variovorax sp. CF313 RepID=J2KU98_9BURK
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
translation initiation factor if-2
cn_combo_scaffold_171_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5963..7456)
DNA (1494bp) protein (498aa)
NusA antitermination factor n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4V4_VARPE
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax
nusa antitermination factor
cn_combo_scaffold_171_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7472..8131)
DNA (660bp) protein (220aa)
Ribosome maturation factor RimP n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4V3_VARPE
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; V
cn_combo_scaffold_171_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8321..9517)
DNA (1197bp) protein (399aa)
Sugar phosphate permease n=1 Tax=Variovorax sp. CF313 RepID=J3CR73_9BURK
Sugar phosphate permease {ECO:0000313|EMBL:EJL76576.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="V
hypothetical protein
cn_combo_scaffold_171_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9534..11174)
DNA (1641bp) protein (547aa)
ABC-type uncharacterized transport system, duplicated ATPase component n=1 Tax=Variovorax sp. CF313 RepID=J2TE86_9BURK
ABC-type uncharacterized transport system, duplicated ATPase component {ECO:0000313|EMBL:EJL76577.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadace
ABC transporter
cn_combo_scaffold_171_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11174..12214)
DNA (1041bp) protein (347aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4V0_VARPE
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU37036.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
cn_combo_scaffold_171_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12362..13402)
DNA (1041bp) protein (347aa)
ABC-type uncharacterized transport system, permease component n=1 Tax=Variovorax sp. CF313 RepID=J3CQQ3_9BURK
ABC-type uncharacterized transport system, permease component {ECO:0000313|EMBL:EJL76579.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Co
binding-protein-dependent transport systems inner membrane component
cn_combo_scaffold_171_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13430..15244)
DNA (1815bp) protein (605aa)
ABC-type oligopeptide transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J2K8M0_9BURK
ABC-type oligopeptide transport system, periplasmic component {ECO:0000313|EMBL:EJL76580.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Co
family 5 extracellular solute-binding protein
cn_combo_scaffold_171_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15282..16064
DNA (783bp) protein (261aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaprot
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Variovorax sp. CF313 RepID=J3CR76_9BURK
short-chain dehydrogenase/reductase sdr
cn_combo_scaffold_171_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16127..16969
DNA (843bp) protein (281aa)
ATP dependent DNA ligase-like protein n=1 Tax=Variovorax sp. CF313 RepID=J2TE88_9BURK
ATP dependent DNA ligase-like protein {ECO:0000313|EMBL:EJL76582.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax
ATP dependent DNA ligase
cn_combo_scaffold_171_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17015..19321)
DNA (2307bp) protein (769aa)
Lysine decarboxylase {ECO:0000313|EMBL:ACS19360.1}; EC=4.1.1.18 {ECO:0000313|EMBL:ACS19360.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Var
Lysine decarboxylase (EC:4.1.1.18)
lysine decarboxylase n=1 Tax=Variovorax paradoxus RepID=UPI000364292F
cn_combo_scaffold_171_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19528..19953
DNA (426bp) protein (142aa)
Membrane protein implicated in regulation of membrane protease activity n=1 Tax=Variovorax sp. CF313 RepID=J3CQQ6_9BURK
Membrane protein implicated in regulation of membrane protease activity {ECO:0000313|EMBL:EJL76584.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
hypothetical protein
cn_combo_scaffold_171_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19991..20920
DNA (930bp) protein (310aa)
Membrane protease subunit, stomatin/prohibitin n=1 Tax=Variovorax sp. CF313 RepID=J2K8M5_9BURK
Membrane protease subunit, stomatin/prohibitin {ECO:0000313|EMBL:EJL76585.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; V
hypothetical protein
cn_combo_scaffold_171_trna_1
unknown

Not on your lists

20946..21033
DNA (88bp)
transferRNA
cn_combo_scaffold_171_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21232..21588
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037562DA
Variovorax paradoxus strain MEDvA23 contig_33, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31415.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
hypothetical protein
cn_combo_scaffold_171_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21689..22078
DNA (390bp) protein (130aa)
chemotaxis protein CheY n=1 Tax=Variovorax paradoxus RepID=UPI00037A734F
Variovorax paradoxus strain MEDvA23 contig_33, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31414.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
response regulator receiver
cn_combo_scaffold_171_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22151..23368)
DNA (1218bp) protein (406aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036CA28A
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL76588.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkho
extracellular ligand-binding receptor rbh
cn_combo_scaffold_171_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23505..23903)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CQQ9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL76589.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
cn_combo_scaffold_171_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23905..24345)
DNA (441bp) protein (147aa)
DNA polymerase III, chi subunit n=1 Tax=Variovorax sp. CF313 RepID=J2K8M9_9BURK
DNA polymerase III, chi subunit {ECO:0000313|EMBL:EJL76590.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp
DNA polymerase iii chi subunit holc
cn_combo_scaffold_171_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24342..25841)
DNA (1500bp) protein (500aa)
leucyl aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase n=1 Tax=Variovorax sp. CF313 RepID=J3CR82_9BURK
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Flags: Precursor;;
cn_combo_scaffold_171_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25863..26984
DNA (1122bp) protein (374aa)
YjgP/YjgQ family permease n=1 Tax=Variovorax paradoxus RepID=UPI000374C2F8
Putative permease {ECO:0000313|EMBL:EJL76592.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor
permease YjgP/YjgQ family protein
cn_combo_scaffold_171_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26981..28093
DNA (1113bp) protein (371aa)
YjgP/YjgQ family permease n=1 Tax=Variovorax paradoxus RepID=UPI000363E1E1
Putative permease {ECO:0000313|EMBL:EJL76593.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor
permease yjgp/yjgq family protein
cn_combo_scaffold_171_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28090..28476
DNA (387bp) protein (129aa)
cobalamin biosynthesis protein CbiX n=1 Tax=Variovorax paradoxus RepID=UPI000371BE4C
Uncharacterized protein {ECO:0000313|EMBL:EJL76594.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
cobalamin (vitamin B12) biosynthesis CbiX protein
cn_combo_scaffold_171_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28540..29481
DNA (942bp) protein (314aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2K8N2_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL76595.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
LysR family transcriptional regulator
cn_combo_scaffold_171_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29478..30650
DNA (1173bp) protein (391aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CR85_9BURK
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EJL76596.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Var
class I and II aminotransferase
cn_combo_scaffold_171_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30782..30940
DNA (159bp) protein (53aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036C4D21
Uncharacterized protein {ECO:0000313|EMBL:EJL76597.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
cn_combo_scaffold_171_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31013..34798)
DNA (3786bp) protein (1262aa)
ATP-dependent helicase HrpA n=1 Tax=Variovorax sp. CF313 RepID=J2KUC1_9BURK
ATP-dependent helicase HrpA {ECO:0000313|EMBL:EJL76598.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF
ATP-dependent helicase HrpA rbh
Displaying items 1-30 of 130 in total

View Taxonomy