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cn_combo_scaffold_590

Alias: VAR87_26

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Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_590_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..406
DNA (405bp) protein (135aa)
electron transfer flavoprotein subunit beta n=1 Tax=Variovorax paradoxus RepID=UPI000374A799
Variovorax paradoxus strain MEDvA23 contig_26, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32752.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
electron transfer flavoprotein alpha/beta-subunit
cn_combo_scaffold_590_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

554..1486
DNA (933bp) protein (311aa)
Electron transfer flavoprotein alpha subunit n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CS39_VARPS
electron transfer flavoprotein subunit alpha
Electron transfer flavoprotein alpha subunit {ECO:0000313|EMBL:ACS19990.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="V
cn_combo_scaffold_590_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1501..2472
DNA (972bp) protein (324aa)
2-nitropropane dioxygenase NPD n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9N9_VARPE
Variovorax paradoxus strain MEDvA23 contig_26, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32754.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
2-nitropropane dioxygenase npd
cn_combo_scaffold_590_4
Pseudomonas sp. MT-1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4044..6071
DNA (2028bp) protein (676aa)
Phosphotransferase domain-containing protein n=1 Tax=Vibrio cholerae HE48 RepID=F9AYS5_VIBCL
Phosphotransferase domain-containing protein {ECO:0000313|EMBL:BAP80667.1}; TaxID=150396 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" sourc
hypothetical protein
cn_combo_scaffold_590_5
Pseudomonas sp. MT-1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6049..6342
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Gilvimarinus chinensis RepID=UPI000361E1B9
Uncharacterized protein {ECO:0000313|EMBL:BAP80666.1}; TaxID=150396 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MT
hypothetical protein
cn_combo_scaffold_590_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6695..7294
DNA (600bp) protein (200aa)
C4-dicarboxylate ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI000374D608
tripartite ATP-independent periplasmic transporter dctq component
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:ADU35077.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
cn_combo_scaffold_590_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7291..8589
DNA (1299bp) protein (433aa)
C4-dicarboxylate ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI000361A6B6
TRAP dicarboxylate transporter subunit DctM
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ACS17487.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vari
cn_combo_scaffold_590_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8684..9721
DNA (1038bp) protein (346aa)
C4-dicarboxylate ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003817B60
TRAP dicarboxylate transporter, subunit DctP
TRAP dicarboxylate transporter, subunit DctP {ECO:0000313|EMBL:AGU48013.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
cn_combo_scaffold_590_9
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9752..10717)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036C4998
AraC family transcriptional regulator {ECO:0000313|EMBL:EPX99564.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralsto
AraC family transcriptional regulator
cn_combo_scaffold_590_10
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10798..11259
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A7F26
Uncharacterized protein {ECO:0000313|EMBL:EPX99563.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-0
tautomerase
cn_combo_scaffold_590_11
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11279..12106
DNA (828bp) protein (276aa)
dienelactone hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI000371447A
Dienelactone hydrolase {ECO:0000313|EMBL:KIF81310.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp
hypothetical protein
cn_combo_scaffold_590_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12176..13153
DNA (978bp) protein (326aa)
Inosine-uridine nucleoside N-ribohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J3CEP0_9BURK
Inosine-uridine nucleoside N-ribohydrolase {ECO:0000313|EMBL:EJL70119.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
inosine/uridine-preferring nucleoside hydrolase
cn_combo_scaffold_590_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13259..14314
DNA (1056bp) protein (352aa)
Putative dienelactone hydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2JQN9_9BURK
Putative dienelactone hydrolase {ECO:0000313|EMBL:EJL70120.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" so
putative dienelactone hydrolase
cn_combo_scaffold_590_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14368..15117)
DNA (750bp) protein (250aa)
ABC transporter related n=2 Tax=Variovorax paradoxus RepID=C5CMI3_VARPS
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACS17484.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
cn_combo_scaffold_590_15
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15145..15813)
DNA (669bp) protein (223aa)
glutamate/aspartate transporter permease GltK n=1 Tax=Variovorax paradoxus RepID=UPI00035DD852
polar amino acid ABC transporter permease
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADX47876.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.
cn_combo_scaffold_590_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15815..16573)
DNA (759bp) protein (253aa)
glutamate ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00036A542B
polar amino acid ABC transporter inner membrane subunit
Polar amino acid ABC transporter inner membrane subunit {ECO:0000313|EMBL:GAO20566.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphi
cn_combo_scaffold_590_17
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16672..17568)
DNA (897bp) protein (299aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036AFAB2
amino-acid ABC transporter bindingprotein ybeJ precursor
Amino-acid ABC transporter bindingprotein ybeJ {ECO:0000313|EMBL:EFI60324.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="
cn_combo_scaffold_590_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17722..19194)
DNA (1473bp) protein (491aa)
aspA; aspartate ammonia-lyase AspA (EC:4.3.1.1)
Aspartate ammonia-lyase AspA {ECO:0000313|EMBL:AGU48007.1}; EC=4.3.1.1 {ECO:0000313|EMBL:AGU48007.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadac
aspartate ammonia-lyase n=1 Tax=Variovorax paradoxus RepID=UPI00036D0EA4
cn_combo_scaffold_590_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19370..20356)
DNA (987bp) protein (329aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CMH8_VARPS
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS17479.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovo
cn_combo_scaffold_590_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20418..21860
DNA (1443bp) protein (481aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Variovorax sp. CF313 RepID=J2JMU7_9BURK
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:EJL69190.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovo
amidase
cn_combo_scaffold_590_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21971..22909)
DNA (939bp) protein (313aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Variovorax sp. CF313 RepID=J3CLM4_9BURK
Lactate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EJL74089.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variov
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
cn_combo_scaffold_590_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22952..24784)
DNA (1833bp) protein (611aa)
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9L7_VARPE
Variovorax paradoxus strain MEDvA23 contig_79, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22980.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
ABC transporter
cn_combo_scaffold_590_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24796..25251
DNA (456bp) protein (152aa)
thioesterase n=1 Tax=Variovorax paradoxus RepID=UPI00036E570D
thioesterase superfamily protein
Acyl-CoA hydrolase {ECO:0000313|EMBL:EJL74087.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
cn_combo_scaffold_590_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25262..26437)
DNA (1176bp) protein (392aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003807673
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADU35063.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor
cn_combo_scaffold_590_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26558..27322)
DNA (765bp) protein (255aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9L4_VARPE
Variovorax paradoxus strain MEDvA23 contig_79, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22982.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
enoyL-CoA hydratase/isomerase
cn_combo_scaffold_590_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27359..27955)
DNA (597bp) protein (199aa)
DSBA oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00036539DE
Variovorax paradoxus strain MEDvA23 contig_79, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22983.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
dsba oxidoreductase
cn_combo_scaffold_590_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27982..28731)
DNA (750bp) protein (250aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9L2_VARPE
short-chain dehydrogenase/reductase sdr
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU35060.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variov
cn_combo_scaffold_590_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28734..29570)
DNA (837bp) protein (279aa)
acyl-CoA thioesterase n=1 Tax=Variovorax paradoxus RepID=UPI00037B6384
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35059.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
cn_combo_scaffold_590_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29600..30505)
DNA (906bp) protein (302aa)
alpha/beta hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI000376255B
hydrolase rbh
Putative alpha/beta hydrolase {ECO:0000313|EMBL:EJL74081.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp.
cn_combo_scaffold_590_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30561..31757)
DNA (1197bp) protein (399aa)
3-ketoacyl-CoA thiolase (EC:2.3.1.16)
3-ketoacyl-CoA thiolase {ECO:0000313|EMBL:AGU47995.1}; EC=2.3.1.16 {ECO:0000313|EMBL:AGU47995.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
3-ketoacyl-CoA thiolase n=1 Tax=Variovorax paradoxus B4 RepID=T1X763_VARPD
Displaying items 1-30 of 66 in total

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